Re: [Bioc-devel] Bioc-devel Digest, Vol 152, Issue 10

2016-11-06 Thread calogero UNITO
Hi Dario, I am the maintainer of chimera package thank for the info I am going to check which is the problem in importFusionData. There is only one example of data import, because of limits in package size. An other example can be retrieved from: download.file("http://sourceforge.net/projects/oc

Re: [Bioc-devel] deprecated org.Hs.egCHRLOC UPDATE: the as.list() behaves differently in stable and devel configuration

2014-09-23 Thread calogero UNITO
> warning. > A message is emitted indicating the deprecation, so we have a release to > figure out how to deal with the fact that the *CHR/*CHRLOC entities will go > away > in the next release. > > There are various possible workarounds. Some more commentary will be > forth

Re: [Bioc-devel] deprecated org.Hs.egCHRLOC

2014-09-23 Thread calogero UNITO
e to > figure out how to deal with the fact that the *CHR/*CHRLOC entities will go > away > in the next release. > > There are various possible workarounds. Some more commentary will be > forthcoming. > > > On Tue, Sep 23, 2014 at 3:52 AM, calogero UNITO > wrote: >

[Bioc-devel] deprecated org.Hs.egCHRLOC

2014-09-23 Thread calogero UNITO
Hi, I am the maintainer of chimera package and I am getting the following error in the develop version: org.Hs.egCHRLOC is deprecated as the data is better accessed from another location. Please use an appropriate TxDb object or package for this kind of data. Could please indicate me which