Hello,
BiocCheck produces the following warning for function with no return value.
WARNING: Add non-empty \value sections to the following man
pages: x.Rd, y.Rd, z.Rd
However, the functions x, y, and z do not return a value since these are
functions which, e.g., plot to grDevices, or write to
Dear Andrew,
Thanks for your suggestion.
Loading the data explicitly in the markdown instead of the YAML section
- appeals to me. It is desirable to show the code in the vignette if the
vignette loads it.
However, I would like not to display the code if I pass the data using
the params argu
/TargetDecoyFDR_Example.Rmd#L16
<https://github.com/protViz/prozor/blob/master/vignettes/TargetDecoyFDR_Example.Rmd#L16>
If you delete it (and the line below to be sure) I guess it will go away.
Best,
Lluís
On Fri, 19 Nov 2021 at 14:33, Witold Wolski <mailto:w...@fgcz.ethz.ch>>
Hi,
I am getting the following error when running BiocCheck
"ERROR: More than one VignetteEngine specified."
But all the vignettes have the same
%\VignetteEngine{knitr::rmarkdown}
specified.
Where else does BiocCheck look for vignetteEngine specification?
Regards
Witek
PS. the code can be f
ith LazyData turned off.
Best regards,
Marcel
On 11/18/21 9:51 AM, Witold Wolski wrote:
Hi,
I with BiocCheck I am getting a warning that my packages uses
LazyData: true.
So far some of the package vignettes loaded the data in the params
section of the Rmd file e.g.,
---
title:
...
...
Hi,
I with BiocCheck I am getting a warning that my packages uses LazyData:
true.
So far some of the package vignettes loaded the data in the params
section of the Rmd file e.g.,
---
title:
...
...
params:
configuration: !r data(prolfqua::data_ionstar);
quote(prolfqua::data_ionstar$filt
