When using this code
WEHAsum = read.csv("/tmp/wehasum.csv", check.names = FALSE, as.is=TRUE)
plotPCA(as.matrix(WEHAsum[,-1][,sort(colnames(WEHAsum[,-1]))]),
x.coord=-20, y.coord=20)
I get
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'plotPCA' fo
ImportMethods(ns, loadNamespace(j <- imp[[1L]],
c(lib.loc, :
No generic function found corresponding to requested imported methods for
"colnames<-" from package "annaffy" (malformed exports?)
* DONE (affycoretools)
2014-07-29 16:04 GMT+02:00 Dan Tenenbaum :
>
>
> -
evision 91908)
> @@ -2,7 +2,7 @@
> Date: 2008-12-15
> Title: Functions useful for those doing repetitive analyses
> with Affymetrix GeneChips.
> -Version: 1.37.2
> +Version: 1.35.10
>
>
>
> On 07/29/2014 03:35 AM, Vojtech Kulvait wrote:
>
>> This do not
limma changelog say:
- symbols2indices() renamed to ids2indices().
2014-07-29 12:35 GMT+02:00 Vojtech Kulvait :
> This do not help either:
>
> > BiocInstaller::biocLite("limma", type="source")
>
> BioC_mirror: http://bioconductor.org
> Using Bioconduc
* removing â/usr/local/lib/R-3.1.1/library/affycoretoolsâ
The downloaded source packages are in
â/tmp/RtmpjACGfx/downloaded_packagesâ
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages(pkgs = pkgs, lib = lib,
n_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.15.5
loaded via a namespace (and not attached):
[1] tools_3.1.1
>
2014-07-25 17:28 GMT+02:00 Martin Morgan :
> On 0
Hello,
I am Vojtech Kulvait and I would like to introduce myself. I am Phd.
student from the Czech Republic and also maintainer of the blima package.
It is intended for (whole) bead level analysis of Illumina bead level data.
I would be glad if you provide me with any feedback. I also hope soon
Hello,
when I try to install affycoretools in devel i get an error:
* installing *source* package âaffycoretoolsâ ...
** R
** inst
** preparing package for lazy loading
Error : object âsymbols2indicesâ is not exported by 'namespace:limma'
ERROR: lazy loading failed for package âaffycoret
