Re: [Bioc-devel] riboSeqR error - matrix of zeros output from riboSeqR::readingFrame()

2015-10-27 Thread Tom Hardcastle
seems to stem from duplicated headers within the minus_rrna_transcriptome.fa file - this should be corrected in the fasta file. Best wishes, Tom Hardcastle On 27/10/15 11:00, bioc-devel-requ...@r-project.org wrote: Message: 1 Date: Mon, 26 Oct 2015 13:57:15 -0700 From: "Arora, Sonali

Re: [Bioc-devel] baySeq countData class bug?

2015-02-23 Thread Tom Hardcastle
Hi, From v2, baySeq has moved from storing data in matrices to arrays, to allow for multi-dimensional analyses. This looks like an unintended consequence of that change - I'll look into it and see if it's fixable, or whether it's indices only from now on. Thanks for bringing it to my attentio

Re: [Bioc-devel] Changing the name of a package

2014-09-23 Thread Tom Hardcastle
t the devel repository. Is there something else I need to do to fix this? Thanks, Tom On 11/09/14 18:50, Dan Tenenbaum wrote: - Original Message - From: "Tom Hardcastle" To: "Dan Tenenbaum" Cc: bioc-devel@r-project.org Sent: Thursday, September 11, 2014 3:25

Re: [Bioc-devel] Changing the name of a package

2014-09-11 Thread Tom Hardcastle
ame throughout, most importantly in the Package: field of the DESCRIPTION file. Dan Best regards, Tom Hardcastle -- Dr. Thomas J. Hardcastle Department of Plant Sciences University of Cambridge Downing Street Cambridge, CB2 3EA United Kingdom _