[Bioc-devel] plyranges maintainer update

2024-04-05 Thread Stuart Lee
Hi bioc-devel, I would like to request for me to removed as maintainer of the plyranges package <https://bioconductor.org/packages/release/bioc/html/plyranges.html> and for > to be added as maintainer. Thank you for your help. Kind regards, Stuart Stuart Lee stuart.andrew@

Re: [Bioc-devel] About the size limitation of the package

2021-05-26 Thread Stuart Lee
Hi You and Lori, Are fitted models in scope for ExperimentHub? I thought it was more for data. Maybe there should be a ModelHub for developers to include trained models from papers in their packages? @You: if that model has been fitted in R take a look at https://github.com/tidymodels/butcher

Re: [Bioc-devel] multicrispr: builds fine on all test platforms except one (nebbiolo)

2020-10-14 Thread Stuart Lee
I have the same thing - looks like a problem with BSgenome.Hsapiens.UCSC.hg19 and friends on the new Ubuntu machine From: Bioc-devel on behalf of Bhagwat, Aditya Sent: Wednesday, 14 October 2020 8:09 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] multicr

Re: [Bioc-devel] plyranges group_by

2019-10-16 Thread Stuart Lee
on what you’re after. Re your other issue would you mind putting it on as a GitHub issue. — Stuart Lee Visiting PhD Student - Ritchie Lab On 16 Oct 2019, at 22:54, Michael Lawrence mailto:lawrence.mich...@gene.com>> wrote: Just a note that in this particular case, selfmatch(annotatedsrf)

Re: [Bioc-devel] Reference manual as HTML

2019-09-25 Thread Stuart Lee
Chiming in to say +1 to this. I also use pkgdown for the same purpose as Laurent. With some kind of CI service you can automate the build of the website after a successful R CMD CHECK. Not sure how tricky this would be to integrate with Bioconductor's build system. __

Re: [Bioc-devel] Extending GenomicRanges::`intra-range-methods`

2019-09-16 Thread Stuart Lee
the directed version for considering strands. https://github.com/sa-lee/plyranges Thanks, Stuart --- Stuart Lee Visiting PhD Student - Ritchie Lab On 13 Sep 2019, at 22:38, Michael Lawrence mailto:lawrence.mich...@gene.com>> wrote: Thanks for these suggestions; I think they're wor