[Bioc-devel] Announcing Bazel for R packages

[x-post from r-package-devel] Hello, We have released some Bazel rules for R packages. https://github.com/grailbio/rules_r What is Bazel? Bazel is an industry tested build system that can be used for continuous integration and testing in large monorepos (multiple software

Re: [Bioc-devel] CRAN dependency missing

1). > > Valerie > > > > On 08/22/2017 10:51 PM, Siddhartha Bagaria wrote: > > Hello, > > The package GoogleGenomics has been failing > > <http://bioconductor.org/checkResults/devel/bioc-LATEST/GoogleGenomics/malbec1-checksrc.html> > > <http://biocon

[Bioc-devel] CRAN dependency missing

Hello, The package GoogleGenomics has been failing the CHECK stage because of a missing CRAN dependency (RProtoBuf ) in the Suggests section.

Re: [Bioc-devel] Bioconductor Git/GitHub Mirrors

oc2015 next week if you want to discuss in > person. > > Jim > > On Tue, Jul 14, 2015 at 4:34 PM, Siddhartha Bagaria > wrote: > > [cc]: bioc-devel for discussion with wider community. >> >> Hello Jim! >> >> This is related to using the new git mirror setup with

[Bioc-devel] Bioconductor Git/GitHub Mirrors

[cc]: bioc-devel for discussion with wider community. Hello Jim! This is related to using the new git mirror setup with pre-existing github repos (not forks of the mirror). I tried following the thread on https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007725.html but it looks like the probl

[Bioc-devel] Announcing a new package: GoogleGenomics

//github.com/googlegenomics/api-client-r/pull/37#issuecomment-94896723 . Thank you. Best regards, Siddhartha Bagaria [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] R CMD CHECK options

Hi Dan, thanks. Just to be sure I understand you, are you saying that everyone manually installs all deps before running the checks? Sent from my mobile device. > On May 13, 2014, at 10:09 AM, Dan Tenenbaum wrote: > > Hi Siddartha, > > - Original Message - >> From

[Bioc-devel] R CMD CHECK options

Hello! This is my first time posting to the community. I am working on a new Bioconductor package for the Google Genomics API. I tried to search but could not find the options and environment variables I should use for R CMD CHECK before submission to Bioconductor. I have dependencies on packages