Dear all,
My package plotting function encounters an error on Bioconductor linux servers:
malbec1 and malbec2. The error does not occur on my linux server. Are there
anyone who have had similar experiences?
The plotting function is plotMotifMatch of atSNP Bioconductor. FYI, here is the
session
decade ;-)
Yours,
Steffen
On Mon, 2020-02-17 at 07:44 +, Shin, Sunyoung wrote:
Hello Steffen,
Thank you for the response. You are right, and I also recognized it.
However, I don’t see the updates from the source package I downloaded
from the package webpage at
https:/
OR, most likely in the examples
to plotMotifMatch().
Also, I guess the version 1.3.0 was the version number
bumped after the last BioC release, so consider
to bump atSNP to 1.3.1 with you next commit.
Hope that helped,
Yours,
Steffen
On Mon, 2020-02-17 at 05:10 +0000, Shin, Sunyoung wrote:
Dear
Dear all,
I used "git push upstream master” to commit changes for atSNP package to
Bioconductor 4 days ago. But, Bioconductor does not take the updated version,
but sticks with the old version of the package, which I committed in October.
Does someone have an idea about how to fix it? Thanks.
ow=arrow(length = unit(0.1, "inches"), angle = 15, ends =
"last"))
grid.text("3'", x=unit(1, "npc") - unit(1, "lines"), gp=gpar(col="blue",
cex=1), y=unit(1, "lines"))
grid.text("5'", x=unit(2, "lines&quo
ot;, lwd = 1.5, xpd=NA)
mtext("5'", 1, adj=max(which(colSums(snp_aug_pwm)!=0))/ncol(snp_aug_pwm),
padj=1, col="blue", cex=1)
mtext("3'", 1, adj=(min(which(colSums(snp_aug_pwm)!=0))-1)/ncol(snp_aug_pwm),
padj=1, col="blue", cex=1)
}
title(main=paste(m
Dear all,
I got an error message: invalid graphics state as below from BUILD report for
atSNP 0.99.23
(https://master.bioconductor.org/packages/3.9/bioc/html/atSNP.html). This
occurs on every platform: malbec2, tokay2, and celaya2. Running
devtools::check() on my local computer does not prod
