Re: [Bioc-devel] SVN to GIT

2018-03-14 Thread Servant Nicolas
gt; > > > On 03/13/2018 02:37 AM, Servant Nicolas wrote: >> Dear Valerie, >> >> I submitted my ssh key but did not receive any confirmation mail that >> it has been done. And the git command still crashes. >> Anything else I can do ? >> Thank you >&g

Re: [Bioc-devel] SVN to GIT

2018-03-13 Thread Servant Nicolas
how-to/git/maintain-github-bioc/ >> >> Specifically, you need to fill out this form using n.servant as your >> username: >> >> https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform >> >> Valerie >> >&

Re: [Bioc-devel] SVN to GIT

2018-03-09 Thread Servant Nicolas
need to fill out this form using n.servant as your > username: > > https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform > > Valerie > > > > On 03/09/2018 08:47 AM, Servant Nicolas wrote: >> Thank you very much. >> T

Re: [Bioc-devel] SVN to GIT

2018-03-09 Thread Servant Nicolas
? Thanks Le 09/03/2018 à 17:43, Turaga, Nitesh a écrit : http://bioconductor.org/developers/how-to/git/ On Mar 9, 2018, at 11:42 AM, Servant Nicolas wrote: Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 à 10:04, Servant Nicolas a écrit : De

Re: [Bioc-devel] SVN to GIT

2018-03-09 Thread Servant Nicolas
Can anyone help me ? If you have any links or tutorial, it would be useful. Thanks Le 06/03/2018 à 10:04, Servant Nicolas a écrit : Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https

[Bioc-devel] SVN to GIT

2018-03-06 Thread Servant Nicolas
Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authe

[Bioc-devel] RE : AnnotationDbi and select function

2014-03-12 Thread Servant Nicolas
th the results of the symbol information by joining on the foreign key for these two DBs. So thats actually much more complex than just extracting all the same data from just the org package even though the end result (in this case) is the same. The bug is probably happening in the associated merg

[Bioc-devel] AnnotationDbi and select function

2014-03-12 Thread Servant Nicolas
Dear all, I have an error using the select function from the AnnotationDbi package. I try to convert some geneID into Symbol, but for some strange reasons it crashed. library(TxDb.Hsapiens.UCSC.hg19.knownGene) txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene isActiveSeq(txdb)[seqlevels(txdb)] <- FALSE

[Bioc-devel] pointer and big matrix in R

2013-04-12 Thread Servant Nicolas
Dear all, I have a S4 object (HTCexp from HITC package), composed of one big matrix, and two genomicRanges objects, A and B which describe the matrix raws and columns. I thinking about a way to decrease the memory size of this object. I also have methods to get/set the matrix and the two GRanges

[Bioc-devel] plots and triangle view

2012-12-03 Thread Servant Nicolas
Hi all, I have 4 matrices that I would like to plot together (as heatmaps) One way to easily do that is to design a layout (or a grid) and to plot them in each (i,j) cells. 1222 1222 1222 1222 1222 3444 3444 3444 But now, I just want to take the same representati