Sorry, I spoke to soon. My PI's email address is j@uq.edu.au
Also, is there anything I should do for the release branch, or just wait until
everything syncs up in October?
Thanks again for the help!
Best,
Sam
From: Samuel E Zimmerman
Sent: Friday, Ju
hanks again.
Best,
Sam
From: Obenchain, Valerie [valerie.obench...@roswellpark.org]
Sent: Wednesday, June 27, 2018 8:24 AM
To: Kasper Daniel Hansen; Samuel E Zimmerman
Cc: Bioc-devel � [bioc-devel@r-project.org] �
Subject: Re: [Bioc-devel] updating maintainer
H
Dear bioc-devs,
I will no longer be working at my current university in about a week, and the
email address associated with the bioconductor packages I maintain will be
removed. How should I go about updating my email address to keep maintaining
the packages?
Also, my PI would like to have the
Thank you very much!
Best,
Sam
On Oct 17, 2017, at 9:58 PM, Obenchain, Valerie
mailto:valerie.obench...@roswellpark.org>>
wrote:
Yes, if all is green on the build report you can ignore it.
Thanks.
Valerie
On 10/17/2017 11:46 AM, Samuel E Zimmerman wrote:
Hi all,
The below email was s
this error message?
Thank you.
Best,
Sam
From: bbs-nore...@bioconductor.org [bbs-nore...@bioconductor.org]
Sent: Tuesday, October 17, 2017 2:35 PM
To: Samuel E Zimmerman
Subject: attract problems reported by the "Build/check report" for BioC 3
Hi Everyone,
One of my colleagues is creating an R package to submit to bioconductor. In one
of his functions he is creating a plot with ggplot2. I tested out the function
for him and occasionally I get the error below. It happens sporadically using
the exact same input as when it works normall
Hi,
I am following the first scenario to change over from SVN to github. When I do
the following commands
git remote add upstream g...@git.bioconductor.org:packages/pathVar.git
git fetch upstream
I get the error
Permission denied (publickey).
fatal: Could not read from remote repository.
Ple
Dear Nitesh,
This may seem like an obvious question, but if we have not created a repository
for our packages yet, should we create a GitHub repository using the directions
here:
https://github.com/Bioconductor/bioc_git_transition/blob/master/doc/scenario-1-svn-to-github.md
Thank you.
Best
From: Dan Tenenbaum [dtene...@fredhutch.org]
Sent: Friday, January 29, 2016 3:40 PM
To: Samuel E Zimmerman
Cc: bioc-devel
Subject: Re: [Bioc-devel] question about citation file
I think you forgot to 'svn add' the CITATION file.
Dan
- Original Message -
> Fr
Hi Everyone,
I just uploaded a new version of my package "pathVar" to the development branch
of bioconductor. The goal was to change the citation on the landing page of the
package. Currently the citation looks like this:
Mar J, torrente Ld and Zimmerman S (2015). pathVar: Methods to Find Path
Great. Thank you for the quick reply and solution!
Sam
From: Dan Tenenbaum [dtene...@fredhutch.org]
Sent: Wednesday, January 27, 2016 11:43 AM
To: Samuel E Zimmerman
Cc: bioc-devel
Subject: Re: [Bioc-devel] package passes R CMD BUILD on Linux (Ubuntu) but
Hi Everyone,
When I uploaded my package to Bioconductor it passed all tests for the Linux
OS, but failed on the Windows Server. The error is below.
Warning: running command '"c:\MikTex2.9\miktex\bin\texify.exe" --quiet --pdf
"pathVar.tex" --max-iterations=20 -I
"E:/biocbld/bbs-3.3-bioc/R/shar
Dear Bioc-devel users,
One of the authors of our package realized that the first letter of her last
name was not capitalized in the description file of the package. Would it be
okay to update the release version of the package to change something small
like this so we don't have to wait 6 month
Hi everyone,
I just submitted a package to Bioconductor. All the tests passed except for the
BiocCheck step in the "Mac OS X Mavericks (10.9.5)/x86_64" OS. The version of
BiocCheck used was 1.5.9 and the error is below.
Error in curl::curl_fetch_memory(url, handle = handle) :
Timeout was rea
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