Re: [Bioc-devel] mail notification support forum stopped

2025-03-27 Thread Robert Castelo via Bioc-devel
Hi, on Feb 12 I brought up this problem in the #support-site channel of the Bioconductor Slack workspace (it's currently the last message on that channel), and it was there where Lori said: "We made some adjustments to try and fix the exposed emails in digest and appears to have broken sending

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-19 Thread Robert Castelo via Bioc-devel
with the package failing on the C23 standard >>>   - issues with the package failing on Windows using the new >>> R toolset for the next R release >>>   - a switch from sprintf to snprintf >>> Tomas and Brian have been super h

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-18 Thread Robert Castelo via Bioc-devel
elpful, and I have several times >> though I had nailed down the issue. Currently, Rgraphviz 2.51.4 >> is failing; it seems that I didn't manage to submit 2.51.5 in time. >> >> So I am working on it, albeit (clearly) not very successfully >>

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-14 Thread Robert Castelo via Bioc-devel
it fixed "soon". > > Best, > Kasper > > On Thu, Mar 13, 2025 at 1:52 PM Robert Castelo via Bioc-devel > wrote: > > Hi, > > I'm experiencing a similar issue with qpgraph, which is failing on > 'nebbiolo1' (ubuntu 24.02

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-13 Thread Robert Castelo via Bioc-devel
Hi, I'm experiencing a similar issue with qpgraph, which is failing on 'nebbiolo1' (ubuntu 24.02) only: https://bioconductor.org/checkResults/3.21/bioc-LATEST/qpgraph/nebbiolo1-buildsrc.html giving the following error when building one of the vignettes: --- re-building ‘qpgraphSimulate.Rnw’ us

Re: [Bioc-devel] ExperimentHub ft resource with password

2025-02-07 Thread Robert Castelo via Bioc-devel
Hi, I think this is an analogous question to the one brought up about year and a half ago by Martin Morgan in this issue: https://github.com/Bioconductor/AnnotationHub/issues/45 on how could we ask the user to accept a license before downloading the corresponding AlphaMissense data from the An