Re: [Bioc-devel] x.y.z version not updated

ump here: > https://code.bioconductor.org/browse/cfTools/commits/devel > > To bring those changes to your github repository you can follow the guides > at > https://contributions.bioconductor.org/git-version-control.html#sync-existing-repositories > . > > Best wishes, > > Lluís &g

[Bioc-devel] x.y.z version not updated

Dear Bioconductor Team, I noticed that cfTools' GitHub page ( https://github.com/jasminezhoulab/cfTools) is not updated following the new RELEASE_3_21. Previously, there will be an automatic bump of the x.y.z version after the new release, but I don't see it this time. Could you please look into t

Re: [Bioc-devel] Build error for cfTools

prehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* Bioc-devel on behalf of RAN HU > > *Sent:* Monday, March 31, 2025 2:14 PM > *To:* Martin Gr

Re: [Bioc-devel] Build error for cfTools

together to resolve this issue and help ensure it doesn't occur in future releases. Thank you for your time and support! Best, Ran On Fri, Aug 16, 2024 at 1:43 PM RAN HU wrote: > Hi Martin, > > Thank you very much for your efforts in solving the problem! I > believe kunpeng2 is

Re: [Bioc-devel] Build error for cfTools

w-cpu-aws==2.12.0 in > /usr/local/lib64/python3.9/site-packages (from tensorflow) (2.12.0) > > I.e. tensorflow 2.12.0 is installed via pip, but conda does not use pip > packages. > > Regards, > Martin > > On Fri, Aug 16, 2024 at 4:51 AM RAN HU wrote: > >> Hi, >&g

[Bioc-devel] Build error for cfTools

Hi, I am the maintainer of the cfTools package. I found cfTools have build errors on palomino7/8 and kunpeng2 for BioC 3.19 and 3.20, which appear to be caused by an environment issue related to a Python dependency. This has happened before and was solved. Could you help me solve this again? And i

[Bioc-devel] cfTools build error

Dear Bioc Team, I have a build error on palomino4 and kunpeng2 due to an environment problem: Multiple platform build/check report for BioC 3.18 - All results for package cfTools (bioconductor.org) PackagesNotFoundError: The follow

Re: [Bioc-devel] Submit additional data package to closed issue #2963

Hi all, Problem solved. I have received instructions on opening a new issue for the related package. Thanks, Ran On Wed, Sep 6, 2023 at 3:58 PM RAN HU wrote: > Dear Bioc team, > > I am the maintainer of the cfTools package. We hope to submit a new > experiment data package to p

[Bioc-devel] Submit additional data package to closed issue #2963

Dear Bioc team, I am the maintainer of the cfTools package. We hope to submit a new experiment data package to provide large data files for cfTools' new updates. If I should submit the related data package to cfTools' previous github issue #2963, could you please reopen the issue for me? Or shoul

Re: [Bioc-devel] Windows build error

Dear BioC team, I wonder if this error is caused by your Windows environment. Or is there anything I can do to fix it? If this Windows build error is not solved, will cfTools still be included in the 3.17 release version? Thanks in advance! Best, Ran On Tue, Apr 18, 2023 at 4:46 PM RAN HU

[Bioc-devel] Windows build error

Hi all, My package cfTools has recently been accepted. I just found that there is a build error on Windows: Multiple platform build/check report for BioC 3.17 - BUILD results for cfTools on palomino3 (bioconductor.org)

Re: [Bioc-devel] Reopen cfTools issue #2608

ark Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* RAN HU > *Sent:* Tuesday, March 21, 2023 11:32 AM > *To:* Kern, Lori > *Cc:*

Re: [Bioc-devel] Reopen cfTools issue #2608

---------- > *From:* Bioc-devel on behalf of RAN HU > > *Sent:* Tuesday, March 21, 2023 12:51 AM > *To:* bioc-devel@r-project.org > *Cc:* Peter Li > *Subject:* [Bioc-devel] Reopen cfTools issue #2608 > > Hi, > > I am the maintainer of cfTools iss

[Bioc-devel] Reopen cfTools issue #2608

Hi, I am the maintainer of cfTools issue #2608. I submitted it last year but didn't have many updates then. This issue has been closed. Now I have modified the package and am ready to submit it again. Could you please reopen the issue? Many thanks! Best, Ran [[alternative HTML version de

[Bioc-devel] How to deal with external software dependencies

Hi all, I am developing a new R package that relies on some external software. There are some system calls written in the R function that requires the path to those external software tools. I am not sure what is the best practice to using external software in R Bioconductor packages. If the exter