Re: [Bioc-devel] Vignette building timing out

2024-09-16 Thread Philipp Angerer
gt; --- > Wolfgang Huber > EMBL > https://www.huber.embl.de/ > ORCID 0000-0002-0474-2218 > > > > > > > > > On 28. Aug 2024, at 11:44, Philipp Angerer > wrote: > > > > Hi, > > > > I'm getting e-mails that the builds for my p

[Bioc-devel] Vignette building timing out

2024-08-29 Thread Philipp Angerer
Hi, I'm getting e-mails that the builds for my package fail: https://bioconductor.org/checkResults/3.19/bioc-LATEST/destiny/nebbiolo1-buildsrc.html No clue why that suddenly happens, I can't reproduce it locally. The bioconductor team forced me to switch away from my vignette building solution u

Re: [Bioc-devel] SVN and GitHub mirror out-of-sync

2016-06-17 Thread Philipp Angerer
On Montag, 18. April 2016 08:10:12 CEST Dan Tenenbaum wrote: > Should be caught up now. > Dan hi, i have the same problem with destiny: the newest commits appear in the SVN but not github (DESCRIPTION has 1.3.3 vs. 1.3.0) SVN: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/destiny/

[Bioc-devel] include .DollarNames.ExpressionSet in Biobase?

2015-12-04 Thread Philipp Angerer
Hi, the S3 generic .DollarNames is used to create tab completions in the R command line and RStudio. since you can access featureData(es)$feature via es$feature, it would be useful to either implement .DollarNames.ExpressionSet or simply names.ExpressionSet I couldn’t find a bug tracker for B

Re: [Bioc-devel] Shouldn't we distinguish between package-specific and dependency errors?]

2015-09-25 Thread Philipp Angerer
On Thursday 24 September 2015 19:54:04 Ludwig Geistlinger wrote: > Well, I guess, Dan, that basically means that breaking cannot happen > within Bioc (as broken packages do not propagate to the repository) and > such cases are exclusively due to breaking of external dependencies such > as observed