Re: [Bioc-devel] Bioconductor is Hiring!

2020-01-27 Thread Peter Langfelder
FWIW, the link does work for me. Peter On Mon, Jan 27, 2020 at 10:55 AM Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > That is unfortunate - We have checked the link and it does seem accurate > and works for our network and out of network collaborators. > https://www.roswellpark.org/c

Re: [Bioc-devel] Python Z trees to hclust

2019-08-03 Thread Peter Langfelder
Hi Bernat, my advice may not be that useful, but it may be better than the silence so far... Regarding the ordering of objects in hclust, if you're willing to do a bit of hacking, have a look at the stats::hclust function; you will see that the ordering is computed by a call to Fortran function h

Re: [Bioc-devel] Replacing deprecated org.Hs.egCHR and friends

2015-01-13 Thread Peter Langfelder
ld see three packages >> with names like TxDb.Hsapiens.UCSC.hg19.knownGene. Which one you decide to >> use is dependent on the build/source you care about. >> >> And if you are completely unfamiliar with these packages, you need to read >> the GenomicFeatures vignet

[Bioc-devel] Replacing deprecated org.Hs.egCHR and friends

2015-01-12 Thread Peter Langfelder
Hi all, can anyone please explain or point me to an explanation of how to replace org.Hs.egCHR and friends that appear to be deprecated in the devel version? The deprecation message isn't very helpful. Thanks! x = org.Hs.egCHR Warning message: In (function () : org.Hs.egCHR is deprecated. Plea