if you have any difficulties.
>
>
> Cheers,
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
Hi,
I am coming back to my package ChIPSeqSpike after a long break. I have
followed the instructions here:
https://bioconductor.org/developers/how-to/git/maintain-github-bioc/
I have imported my project in eclipse and did a push after modifying the
NEWS file. Will this be visible on the dev page
perfect! thanks a lot
2018-05-16 10:32 GMT-04:00 Martin Morgan :
>
>
> On 05/16/2018 10:23 AM, Nicolas Descostes wrote:
>
>> Dear Martin,
>>
>> I am starting using BiocInstaller. Regarding the BiocManager::valid(),
>> would it be possible to retrieve a lis
Dear Martin,
I am starting using BiocInstaller. Regarding the BiocManager::valid(),
would it be possible to retrieve a list with one element being a vector of
the packages to update? or to run BiocManager() as we do with biocLite()?
I would find it easier then copying/pasting the suggested comman
s,
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Bioc-d
Dear all,
I am using htseqtools on the devel version and I get the following error
when using giniCoverage:
test <- lapply(endoExoBamlist, function(bam_files){
return(lapply(bam_files, function(bamfile){
ga <- if(paired)
gt; ------
> *From:* Bioc-devel on behalf of
> Nicolas Descostes
> *Sent:* Thursday, May 10, 2018 5:44:43 PM
> *To:* bioc-devel@r-project.org
> *Subject:* [Bioc-devel] biocValid() and package version
>
> Hi,
>
> I am using R-devel with R 3.5 as my pac
Hi,
I am using R-devel with R 3.5 as my package will be released with this
version.
I want to make sure that I am using the latest version of all packages:
library("BiocInstaller")
biocValid()
Installed Built ReposVer
airway "0.112.0" "3.4.3" "
Dear Community,
I have done a commit the 11th of April that does not appear anywhere. My
package is ChIPSeqSpike and the last push should be 0.99.22.
The build report indicates:
*ChIPSeqSpike
<http://bioconductor.org/packages/3.7/bioc/html/ChIPSeqSpike.html> 0.99.21*
Nicolas Descoste
Dear community,
When my package ChIPSeqSpike was accepted, I have been noticed that no
further action was required regarding my github (
https://github.com/descostesn/ChIPSeqSpike).
I did two commits with version bump yesterday and I did not receive any
notification. I checked the version at
http
Dear Bioconductor community,
When developing further a package, is the best practice to create a branch
and bump the version when a full new feature is merged or to stay on the
master without bumping when committing temporarily? More generally, When do
you usually bump a version?
Thank you.
Nic
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