Thanks for the quick reply. Will i need to bump the version to trigger a
rebuild once the changes are made?
On 29 Mar 2017 5:17 pm, "Jurat Shayidin" wrote:
> Hi:
>
> This happened to me several times, and I figured out the issue. I tried to
> remove `rtracklayer` package completely from `R` home
Hi all,
I receive this error when loading rtracklayer in my vignette which is
stopping my package from building:
Loading required package: IRanges
Loading required package: GenomeInfoDb
Quitting from lines 39-50 (heatmaps.Rmd)
Error: processing vignette 'heatmaps.Rmd' failed with diagnostics:
pac
is. Will fix.
>>
>> H.
>>
>> On 01/04/2016 10:53 AM, Malcolm Perry wrote:
>>
>>> Hello,
>>>
>>> A recent question on the support site (
>>> https://support.bioconductor.org/p/76430/#76460) shows that the mcols
>>> assignm
Hello,
A recent question on the support site (
https://support.bioconductor.org/p/76430/#76460) shows that the mcols
assignment in GRanges (and perhaps others) is subtly different from classes
that purely inherit from Vector (such as GenomicInteractions in the
example), as the GRanges method will
Our package, GenomicInteractions, was designed partly with this goal in
mind. The latest version is in Bioc release and on github (
https://github.com/ComputationalRegulatoryGenomicsICL/GenomicInteractions).
We've represented interactions using two different sets of anchors, with an
additional 'co
My error with the link Dan - I am talking about the release builds.
On Wed, Sep 23, 2015 at 4:26 PM, Dan Tenenbaum
wrote:
>
>
> - Original Message -
> > From: "Malcolm Perry"
> > To: bioc-devel@r-project.org
> > Sent: Wednesday, September 23, 201
Hi everyone,
I'm not getting notifications at all when the build status of the package I
am maintaining changes (
http://bioconductor.org/packages/devel/bioc/html/GenomicInteractions.html
in this case, which broke due to changes in data.table), they are only
going to my co-maintainer. I've checked
Hi Sean,
The idiom I've most often seen for getting round this problem is to first
find matching chromosomes in the RleList, and subset the RangesList based
on this order:
chrs = intersect(names(rle_list), as.character(seqlevels(windows)))
myViews = Views(rle_list[chrs], as(windows, "RangesList")
