[Bioc-devel] ggplot2 2.0.0 export Position now, conflict with BiocGeneric::Position?

2015-12-19 Thread Lo
Hi all, maybe this is so stupid, I just updated to R 3.3 and all packages, including gglot2 (2.0.0, two days ago). I noticed ggplot2 now export Positions, and I think BiocGenerics as well has that? Now I having problems with my package that is under review in the package builder with this

Re: [Bioc-devel] help with imports for new package and other questions

2015-08-20 Thread Lo
lugin to some editors. The developer, Jim Hester, is also part of the Bioconductor team! Adrienne On Aug 14, 2015, at 6:57 AM, Lo wrote: Hi, I am trying to get right my new package (http://github.com/lpantano/isomiRs). But I am having some problems with the packages I import. The main probl

Re: [Bioc-devel] help with imports for new package and other questions

2015-08-17 Thread Lo
les generated with codetoolsBioC. Unless there is a good reason for doing so, these should be avoided and the methods package fully imported. Cheers, H. On 08/14/2015 06:57 AM, Lo wrote: Hi, I am trying to get right my new package (http://github.com/lpantano/isomiRs). But I am having some problems w

Re: [Bioc-devel] help with imports for new package and other questions

2015-08-14 Thread Lo
gehog.fhcrc.org/gentleman/bioconductor/trunk/madman/Rpacks/codetoolsBioC > > Best, > Kasper > > On Fri, Aug 14, 2015 at 9:57 AM, Lo <mailto:lorena.pant...@gmail.com>> wrote: > > Hi, > > I am trying to get right my new package > (http://github.com/lpantano/isom

[Bioc-devel] help with imports for new package and other questions

2015-08-14 Thread Lo
Hi, I am trying to get right my new package (http://github.com/lpantano/isomiRs). But I am having some problems with the packages I import. The main problem is that I get warnings while loading my packages because some dplyr replaces functions in others packages like S4Vectors and others.