[Bioc-devel] sensibility and specificity in trimLRpatterns

2019-03-13 Thread Leandro Roser
Hello Bioc, I am running some tests to compare trimLRpatterns vs other trimming tools (skewer, cutadapt, AdapterRemoval). I have generated simulated data using ART (https://www.niehs.nih.gov/research/resources/software/biostatistics/art/index.cfm). In particular, there is a modified version of th

Re: [Bioc-devel] Bug in Biostrings::reverse?

2018-02-12 Thread Leandro Roser
I have been able to make it work now, sorry for the previous email. Best, Leandro. On Mon, Feb 12, 2018 at 4:52 AM, Leandro Roser wrote: > > Dear BioC, > > > Using the devel version of Biostrings (2.47.9) i am obtaining an error > message with the 'reverse'

[Bioc-devel] Bug in Biostrings::reverse?

2018-02-11 Thread Leandro Roser
Dear BioC, Using the devel version of Biostrings (2.47.9) i am obtaining an error message with the 'reverse' function (below an example): subject <- DNAStringSet(c("ATCATGCCATCATGAT", "ATTTGGAATCAT")) reverse(subject) Error in (function (classes, fdef, mtable) : unable to find an inherited