[Bioc-devel] Request to reverse package deprecation (and support pushing changes)

Good afternoon: I'm the maintainer for the Bioconductor package "bigPint", located here . I've recently tried to push changes I made to resolve ERRORS in my package by the command " git push upstream devel". However, this has l

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

ease than nitesh > is right and it would be better to do that and follow his commands he sent > earlier. > > Get Outlook for Android <https://aka.ms/ghei36> > > ------ > *From:* L Rutter > *Sent:* Sunday, March 15, 2020 11:03:42 PM > *To:* Sheph

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

rch 15, 2020 4:59:14 PM > *To:* Turaga, Nitesh ; L Rutter < > lindsayannerut...@gmail.com> > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11) > > Hello, > > Nitesh I disagree. Given this is a bug correction and the relea

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

gt; > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* L Rutter > *Sent:* Wednesday, March 11, 2020 4:05 AM > *To:* Shepherd, Lori > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] R CMD build error for 3.10 (but not

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

ori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* L Rutter > *Sent:* Tuesday, March 10, 2020 4:11 AM

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

and <<<<<. you delete those >and keep the changes you want to commit. Then add and commit like normal >and git should give you messages about resolving conflicts. > > > Hope this helps. Let me know if you run into any further trouble. > > Cheers > >

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

stics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:* L Rutter > *Sent:* Tuesday, February 25, 2020 1:55 AM > *To:* Shepherd, Lori > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] R CMD build error f

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

lease 3.10 branch. > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *F

[Bioc-devel] R CMD build error for 3.10 (but not 3.11)

ing advice on what a maintainer should try in this situation? Is it possible my changes were only recognized in version 3.11 but not version 3.10? Thank you for any advice you may have! Sincerely, L. Rutter [[alternative HTML version deleted]]

Re: [Bioc-devel] 80% of man pages must have runnable examples (package with numerous Shiny apps)

of > your package > > Best wishes > Kevin > > On Mon, Nov 19, 2018 at 7:00 PM Shepherd, Lori > wrote: >> >> Submit with the dontrun{} and temporarily ignore the ERROR - when >> submitting please reference the explanation below. Your reviewer could >

[Bioc-devel] 80% of man pages must have runnable examples (package with numerous Shiny apps)

Hello all: I am planning to submit a package to Bioconductor and have one last item from BiocCheck (error, warning, note) I have been unable to resolve: ERROR: At least 80% of man pages documenting exported objects must have runnable examples. The following pages do not: plotLitreApp.Rd, plotPCPA

Re: [Bioc-devel] Manually editing man/.Rd files to pass BiocCheck

Thanks for the confirmation. I will post if I do find ways to resolve this issue without manually editing the .Rd file. On Mon, Nov 19, 2018 at 12:31 AM Michael Lawrence wrote: > > On Sun, Nov 18, 2018 at 9:16 PM L Rutter wrote: > > > > Hello all: > > > > I am pr

[Bioc-devel] Manually editing man/.Rd files to pass BiocCheck

Hello all: I am preparing to submit a package to Bioconductor and have one note from R CMD BiocCheck that I have been unable to resolve. The note I receive is: NOTE: Consider multiples of 4 spaces for line indents, 40 lines(1%) are not. First 6 lines: man/plotClusters.Rd:8 threshVal =