[Bioc-devel] No vignette

Hi I finally have the devel version of my R package IsoformSwitchAnalyzeR working (sorry I did not make it before the 1.17 release, but a new dependency was only approved last second). But now the devel version does no

[Bioc-devel] How to handle namespace/import of Rcurl

Hi Devel I've recently added a function which relies on Rcurl but I'm having trouble figuring out how to handle it in the namespace/import since it behaves differently from other packages I rely on. As seen here I curr

[Bioc-devel] NEWS not updated on devel site

I just noticed that on the devel site for my package the NEWS file linked to in the "Documentation" tab (linking to this ) is outdated. The cu

[Bioc-devel] Unable to push to git

Hi bioc-devel I have for a couple of days tried pushing the last updates of my package IsoformSwitchAnalyzeR to git.bioconducor.org so they could be part of the stable release - but unfortunately without luck. I have followed instructions in the developer section and I have submitted my public ke

[Bioc-devel] How to solve warnings generated by loading other packages

ng (only) on tokay2 (windows). How do I solve this problem? In advance - thanks. The details about the submission and package can be found here: https://github.com/Bioconductor/Contributions/issues/349 http://bioconductor.org/spb_reports/IsoformSwitchAnalyzeR_buildreport_20170421060205.html ht

[Bioc-devel] Mistake in extractTranscriptSeqs() {from: GenomicFeatures} when transcripts are on minus strand

1.4 [21] ggplot2_1.0.0 RSQLite_0.11.4 DBI_0.2-7 BiocGenerics_0.11.4 -- Kindest regards Kristoffer Vitting-Seerup, cand.scient. (M.Sc.), Ph.D Fellow Sandelin Group Bioinformatics Centre | Biotech Research & Innovation Centre (

[Bioc-devel] GIntervalTree objects are corrupted during save/load

.4.2 gtable_0.1.2 iterators_1.0.7 lattice_0.20-29 latticeExtra_0.6-26 matrixStats_0.8.14 munsell_0.4.2 [37] proto_0.3-10 scales_0.2.4 sendmailR_1.1-2 splines_3.1.0stats4_3.1.0 str