Re: [Bioc-devel] New package submission - how to add a webhook?

Oh lord, rookie mistakei was in the main settings instead of the repository settings haha Thank you Martin! On Fri, Aug 17, 2018 at 6:07 PM, Kenneth Condon wrote: > Hi all, > > I have just submitted a new package for inclusion in the next bioconductor > release. > >

[Bioc-devel] New package submission - how to add a webhook?

Hi all, I have just submitted a new package for inclusion in the next bioconductor release. According to the instructions , after adding a new issue I must now add a webhook. How do I add a webhook since

Re: [Bioc-devel] Package size note

se. > > > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > -- > *From:*

[Bioc-devel] Package size note

Hi all, I almost have a clean R CMD check. R CMD check results0 errors | 0 warnings | 1 note checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: data 3.0Mb doc2.9Mb Firstly, do I need to get this below 5Mb? Secondly, I don't have

Re: [Bioc-devel] Fwd: Vignette warnings/errors

to your vignette YAML ... see 1.4.2 of https://cran.r-project.org/ > doc/manuals/r-release/R-exts.html#Writing-package-vignettes > > On Fri, May 11, 2018 at 1:47 PM, Kenneth Condon > wrote: > >> I forgot to add the YAML header of my .rmd file. >> >> --- >

[Bioc-devel] Fwd: Vignette warnings/errors

I forgot to add the YAML header of my .rmd file. --- title: "User Guide" author: "Kenneth Condon" date: "`r Sys.Date()`" output: html_document: number_sections: true theme: cerulean highlight: default toc: TRUE

[Bioc-devel] Vignette warnings/errors

Hi all, I'm hoping to submit my package soon. But I am having issues with the vignette. R CMD check results0 errors | 1 warning | 0 noteschecking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘UserGuide.Rmd’, ‘UserGuide.html’, ‘images/benchmark

Re: [Bioc-devel] CRAN R 3.5 binary - where is it?

Hi, I have managed to navigate through the dependency issues on my work desktop. Over the weekend I will mess about on my own laptop to follow your suggestions to get the 2.5 binary installed form from launchpad. Thank you all, Kenneth [[alternative HTML version deleted]] _

Re: [Bioc-devel] CRAN R 3.5 binary - where is it?

u're on Ubuntu 14.04. Have you tried in Terminal: > sudo apt-get update > sudo apt-get upgrade > > to upgrade your R version? > > Best, > Clarice. > > Em qui, 10 de mai de 2018 às 14:20, Kenneth Condon > escreveu: > >> Hi all, >> >> I want to s

[Bioc-devel] CRAN R 3.5 binary - where is it?

Hi all, I want to submit a package to bioconductor this week but first I want to build it on the latest R 3.5 release (with bioconductor 3.7). However, CRAN only has 3.4 binaries so I've had to build 3.5 from source which has unfortunat

[Bioc-devel] build_vignette

Hi, I am creating my first package and have run into an issue when building the vignette with devtools::build_vignette() in Rstudio. In a nutshell, I add_vignette() , make a few edits, build_vignette, view the redered html. That is all fine until I try to make more edits to the .Rmd file. As so

Re: [Bioc-devel] Missed deadline

to bioconductor any time after the deadline, it will > simply go to the development repo for ~6 months, which, as he points out, > may not be a bad thing if it's not ready yet. > > On Tue, Apr 3, 2018 at 8:06 AM, Levi Waldron > wrote: > >> On Tue, Apr 3, 2018 at 5:32

[Bioc-devel] Missed deadline

Hello, Have I missed the deadline for the latest release? I have created a package, that runs great but there are a number of errors still from R CMD check that I am sorting out. This is my first R package so I'm not sure if development is far enough along, although I suspect it might be. Could