.
Kind regards
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
--
Disclaimer : http://helpdesk.ugent.be/e-maildisclaimer.php
epending on the main software package with only the example
data and vignette.
We would love to hear your view on this, as we'd like to limit the amount of
issues for both you and us once we submit the package(s). Other suggestions are
more than welcome too.
Thank you in advance
J
e and my SSH key has
been registered by Bioconductor before. Is it necessary for the author to
submit one as well, or is my key as a maintainer enough?
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B
erd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
> *From:* Bioc-devel on behalf of Joris
> Mey
e a reason why the old installation procedure is still
mentioned there?
https://www.bioconductor.org/install/
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
<https://maps.
n our web site and individual vignettes.
> >
> >
> > Of course the key question is the name of the 'BiocManager' package.
> > It cannot easily be 'BiocInstaller', because of the differences in way
> > CRAN and Bioconductor version packages. Some possib
safe than sorry. If you
have pointers, I can check the patch in these contexts and hopefully
prevent possible problems before they arise.
Reference to the issue :
https://github.com/RcppCore/Rcpp/issues/861#issuecomment-395199660
Cheers
--
Joris Meys
Statistical consultant
Department of Da
improve general maintainability -- Joris, can you pick
> one, make a github repo that we can collaborate on revising, and then
> we can start? It will involve a deprecation process.
>
> On Sat, May 5, 2018 at 10:54 AM, Joris Meys wrote:
>
>> Thank you for the answer.
>>
&g
ce?
> >>
> >> I think bioconductor 3.7 cannot be installed on R 3.4 so any advice
> would
> >> be appreciated.
> >>
> >> Thanks,
> >> Kenneth.
> >>
> >> [[alternative HTML version deleted]]
> >>
>
lt;
> valerie.obench...@roswellpark.org> wrote:
>
>> Joris,
>>
>> Sorry I don't have much to offer here. I've cc'd the authors of oligo and
>> affy who may have some insight.
>>
>> Valerie
>>
>>
>> On 05/02/2018 11:35 AM, Joris Meys
These functions all come from the stringi package. My first thought wpuld
be a namespace conflict.
Cheers
Joris
On Thu, 3 May 2018, 18:58 Christopher John,
wrote:
> Dear Bioconductor
>
> I am getting a new weird error from today I think with my M3C package:
>
> http://bioconductor.org/packages/3
example to
report this critical bug?
Thank you in advance
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links 653, B-9000 Gent (Belgium)
<https://maps.google.com/?q=Coupure+links+653,%C2%A0B-9000+Gent,%C2%A0Belgiu
,
> Pete
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathematical Modelling
Ghent University
Coupure Links
nded packages like the survival
package, I don't see how this would be a reason to reject a package. But it
still makes sense to adapt your links in the way it is specified in the
official R manual.
Cheers
Joris
--
Joris Meys
Statistical consultant
Department of Data Analysis and
d this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.
> [[alternative HTML version deleted]]
>
> _______
> Bioc-devel@r-project.org mailing list
> https://stat.
me do I use then for sending a new
public key?
- I use my work email for maintaining the package, but my account is set to
my personal email. Is that a problem and if so, how should I tackle that?
Thank you in advance.
--
Joris Meys
Statistical consultant
Department of Data Analysis and Mathemat
, Martin Morgan <
martin.mor...@roswellpark.org> wrote:
> On 08/22/2017 06:07 AM, Joris Meys wrote:
>
>> As said, this is what I got after
>>
>> git fetch upstream
>>
>> As per instructions here: http://bioconductor.org/develo
>> pers/how-to/git/mai
org> wrote:
> On 08/22/2017 04:59 AM, Joris Meys wrote:
>
>> Hi,
>>
>> I sent my public key as registered in my github account to you a while
>> ago,
>> but when I tried to clone my repository, I get the following error message
>> after git fetch upst
emote repository.
Please make sure you have the correct access rights and the repository
exists.
-
I've been googling and hurting my brain to figure out what I did wrong, but
I honestly don't have a clue. Can anyone tell me how I can solve this?
Cheers
Joris
--
Joris Meys
Stati
ace in the
> body of the function. I'm curious what other developers think would be
> best practice for where/how to store this message content in a
> package.
>
> best,
> Mike
>
> ___
> Bioc-devel@r-project.org mailing list
es", cl, function(object) .nodes(object))
> >>>> error: no existing definition for function ‘nodes’
> >>>> Execution halted
> >>>>
> >>>> I've searched informations about these errors and I&
,
> methods
> Suggests: knitr,
> rmarkdown,
> testthat
> VignetteBuilder: knitr
>
>
>
> Regards,
> Andreas
>
> [[alternative HTML version deleted]]
>
> ___
> Bioc-devel@r-project.org mailing
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