Hi,
We've been encountering a cstack related error on the build systems on
random occasions
(https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/ReactomeGSA/nebbiolo2-checksrc.html):
Error: C stack usage 7970308 is too close to the limit
I know, that the limit can be adapted using
contains more than one vignette like here, keep in
mind that 'R CMD build' evaluates them all in the same
R session. This "feature" can help a vignette succeed
even if it's broken. For example if ReactomeGSA
Bioconductor Core Team
From: Bioc-devel mailto:bioc-devel-boun...@r-project.org>> on behalf of Johannes
Griss mailto:johannes.gr...@meduniwien.ac.at>>
Sent: Thursday, February 1, 2024 3:18 PM
To: bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>
mailto:b
Hello,
I just received a second warning the our package ReactomeGSA is failing
in both release and devel on all platforms.
Quickly checking the respective reports shows that this is not the case:
https://bioconductor.org/checkResults/release/bioc-LATEST/ReactomeGSA/
https://bioconductor.org/c
ght need to update your data object in ReactomeGSA.data.
Jennifer Wokaty (they/them)
Waldron Lab at CUNY SPH
Bioconductor Core Team
----
*From:* Bioc-devel on behalf of
Johannes Griss
*Sent:* Friday, November 3, 2023 4:52 PM
*To:*
Hi everyone,
For a while the build system reported an error that our ReactomeGSA
package cannot be build due to the missing dependency of the
"ReactomeGSA.data" package which is required to build the vignettes and
is listed in the "Suggests" section.
ReactomeGSA.data seems to building fine t
Hi everyone,
Since scAnnotatR (the renamed version of scClassifR) is now available,
we'd like to deprecate scClassifR.
We'd be grateful if you could point us in the right direction.
Thanks a lot!
Johannes
___
Bioc-devel@r-project.org mailing lis
nifer Wokaty
Bioconductor Core Team
From: Bioc-devel on behalf of Johannes Griss
Sent: Thursday, October 14, 2021 4:48 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] ReactomeGSA - SSL Certificate Error on MacOS build
***ATTENTION: This email came fr
Hi everyone,
My package "ReactomeGSA" is currently not building on MacOS due to a
presumably expired SSL certificate.
The certificate was expired for a few days, but we renewed it already a
few weeks ago. It seems, that the build system is not fetching the new
certificate. On all other build
Hi Nitesh,
As we discussed, thanks a lot for doing the update on the Bioconductor
Git server! Everything's working perfectly again.
Kind regards,
Johannes
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Hi,
I'm getting a strange build error for the ReactomeGSA package. The
package accesses our API through an https connection. I couldn't find
any issue with our certificate. Builds on Linux and Mac are working fine.
Therefore, it seems to be related to the certificate management on
tokay2. I'd be
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