Re: [Bioc-devel] Git mirror out of sync (LOBSTAHS package)

2017-06-29 Thread James Collins
commits. > > Martin > > On 06/28/2017 05:52 PM, James Collins wrote: >> Hi all — >> Sorry for the trouble, but the LOBSTAHS Git mirror seems to be out of sync, >> both on the devel (master) and release-3.5 branches. I pushed a bunch of new >> commits to devel,

[Bioc-devel] Git mirror out of sync (LOBSTAHS package)

2017-06-28 Thread James Collins
Hi all — Sorry for the trouble, but the LOBSTAHS Git mirror seems to be out of sync, both on the devel (master) and release-3.5 branches. I pushed a bunch of new commits to devel, and I had to push a few commits to release-3.5 as well to fix a bug identified by a user in the current release vers

[Bioc-devel] Package LOBSTAHS - Git mirror and SVN out of sync (again)

2017-02-07 Thread James Collins
Hi all - With many apologies in advance, it appears that SVN and the Git mirror for the LOBSTAHS package are again out of sync. I really thought I had waited long enough between commits for the mirror to catch up, but I guess I did not. I just checked, and all the commits made it successfully in

Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread James Collins
Thanks Valerie --- this makes complete sense, but I did not think about it. Might be good to post to the new package development FAQ if not there already. > On Jan 26, 2017, at 5:20 PM, Obenchain, Valerie > wrote: > > It's good practice to bump the version as part of > your final commit. When

Re: [Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread James Collins
bioconductor.org/checkResults/3.5/bioc-LATEST/LOBSTAHS/> > is 1.1.1. Did you do a couple of updates very recently - remember the build > system gets run (at most) daily. > > Best, > Kasper > > On Thu, Jan 26, 2017 at 9:53 AM, James Collins <mailto:james.r.coll...@aya.

[Bioc-devel] LOBSTAHS dev build failing on toluca2; version does not update in devel

2017-01-26 Thread James Collins
Hi all: Two questions regarding the LOBSTAHS package: 1. Dev build seems to be failing (“error”) on toluca2 after I pushed some updates from our git repository to Bioc svn. Error is: * installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’ ERROR: dependencies ‘xc

Re: [Bioc-devel] Files removed from svn are not disappearing from Git mirror

2016-11-15 Thread James Collins
them. Hopefully this is the last time I "break" the mirror-svn connection. Jamie On Mon, Nov 14, 2016 at 9:38 PM, James Collins wrote: > I have attempted to remove several .tar.gz files from the LOBSTAHS package > directory using a series of cherry-picked commits. (I had successfully

[Bioc-devel] Files removed from svn are not disappearing from Git mirror

2016-11-14 Thread James Collins
I have attempted to remove several .tar.gz files from the LOBSTAHS package directory using a series of cherry-picked commits. (I had successfully removed these .tar files a few months ago, but somehow they just reappeared in the directory after I invoked git svn rebase during a recent attempt to co