[Bioc-devel] UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 234445: ordinal not in range(128)

2020-05-18 Thread Jakob Theorell
Dear all, I guess this is related to some to me unknown failure on my side to avoid merge conflicts, but I now get the above error when I try to push upstream. I started by pulling upstream changes, had no obvious conflicts, and when pushing I still got this. Puzzled. Have tried to look it up, b

Re: [Bioc-devel] Question about "Warning: '.local' is deprecated."

2020-04-27 Thread Jakob Theorell
Thank you! Found it: "flowCore::description" is old, "flowCore::keyword" is replacement. Best regards Jakob From: Martin Morgan Sent: 27 April 2020 10:28 To: Jakob Theorell ; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Question about &

[Bioc-devel] Question about "Warning: '.local' is deprecated."

2020-04-26 Thread Jakob Theorell
Deprecated") And most annoying of all: there are no .local calls in the package since weeks back. Very thankful for any input that can straighten this out. Best regards Jakob Theorell, MD/PhD Autoimmune Neurology Group Nuffield Department of Clinical Neurosciences University of Oxford Phon

Re: [Bioc-devel] Trigger a new build after version bump

2019-12-16 Thread Jakob Theorell
build report. And you have to go in and check the build reports yourself on the BioConductor sites related to the release and devel branches. Best regards Jakob Theorell, MD/PhD Autoimmune Neurology Group Nuffield Department of Clinical Neurosciences University of Oxford

Re: [Bioc-devel] BiocManager not installing latest release version of DepecheR

2019-11-13 Thread Jakob Theorell
ate all packages to 3.10 versions > > > Cheers, > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > >

[Bioc-devel] BiocManager not installing latest release version of DepecheR

2019-11-13 Thread Jakob Theorell
age contains. Have I missed something I should have done to prevent this and what can I in that case do now? Best regards Jakob Theorell, MD/PhD Autoimmune Neurology Group Nuffield Department of Clinical Neurosciences University of Oxford [[alternative

[Bioc-devel] Sudden dependency-driven DepecheR check-error on malbec1 - action needed?

2019-10-28 Thread Jakob Theorell
to avoid any errors, so this feels most unfortunate. Is there anything I can/should do at this stage? Best regards Jakob Theorell, MD/PhD Autoimmune Neurology Group Nuffield Department of Clinical Neurosciences University of Oxford Phone: +447597976151 [[alternative HTML version deleted

[Bioc-devel] Regarding a discrepancy in test_that speed between Windows and Linux

2019-01-21 Thread Jakob Theorell
? It might be worth mentioning that we use quite a lot of foreach-based parallel processing in the package. Very thankful for any input! Best regards Jakob Theorell, MD/PhD Autoimmune Neurology Group Nuffield Department of Clinical Neurosciences University of Oxford [[alternative HTML