GRanges or IRanges object
is generally not efficient and should be avoided. There is almost
always a "vectorized" solution and it's generally much faster.
However, depending on what you are trying to do exactly, coming up
with a "vectorized" solution can be tricky.
Cheers,
gments based on coverage patterns across the range.
Thanks!
Jack
Michael Lawrence wrote:
> Just out of curiosity, why are you looping over a GRanges in the first place?
>
> On Mon, May 14, 2018 at 7:28 AM, Jack Fu wrote:
>> Hey all,
>>
>> I think some of the recent changes
Hey all,
I think some of the recent changes to GRanges has affected using the
apply class functions with GRanges objects:
o GenomicRanges now is a List subclass. This means that GRanges objects
and their derivatives are now considered list-like objects (even though
[[ don't work
f you don't currently have access, I need to know
your github username.
Jeff, are we adding Jack to both polyester and ballgown?
Valerie
On 02/13/2018 02:57 AM, Jeff Leek wrote:
HI Bioc Team
If you could please add Jack that would be great!
Jeff
On Mon, Feb 12, 2018 at 7:53 AM Jack Fu <m
Hi Bioc team,
I'm currently maintaining the packages Ballgown and polyester. However,
I haven't been able to access the new system since the change in system.
I'm wondering if I would be able to be give access? I have included the
maintainers on file for those packages as well.
Best,
Jack
__
Hey! Sorry to trouble y'all, but I'm the maintainer for the packages
polyester and ballgown.
I don't think my keys are linked up to pushing to those packages and I
was wondering if someone could help me out with that?
Thanks!
Jack
___
Bioc-devel@r-pr
