Re: [Bioc-devel] What is Bioconductor's position on allowing users to create files in the working directory without an explicit path definition in the filename

2019-03-22 Thread Francesco Ferrari
Dear all, if I understand correctly, the main problem stems from the fact that the function has set a default value for "Output.Filename” argument. Would it then be ok to have NO default value for Output.Filename? So as to force the user to specify one Or alternatively, the solution adopt

Re: [Bioc-devel] EXTERNAL: Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7

2018-09-17 Thread Francesco Ferrari
uctor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <mailto:bioc-devel-boun...@r-project.org>> on behalf of Francesco Ferrari > mailto:francesco.ferr..

[Bioc-devel] Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7

2018-08-06 Thread Francesco Ferrari
Looks like a CRAN package is no more available, and this is triggering a problem with a “suggested” dependency * checking package dependencies ... ERROR Package suggested but not available: ‘samr’ which indeed has been removed from CRAN on July 20: https://cran.r-project.org/web/packages/samr/i