me this is rather a build system problem then a package problem
or? If not, we would need to dive into why this happens.
Best regards,
Christian
--
Dr. Christian Mertes
Workflow Coordinator @ GHGA
GHGA@Munich / Gagneur lab / MDSI
Computational Molecular Medicine
Technical University
ill be included
> in the upcoming release.
>
> thank you.
>
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Comprehensive Cancer Center
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
> From: Bioc
/bioc-LATEST/OUTRIDER/
Would it be still possible to patch it to make it work again? I can
understand if the branch 3_11 is fixed and you do not want to touch it
again.
I attached the patch if you decide to change it.
Best,
Christian
--
Christian Mertes | PhD Student / Lab Administrator
Gagneu
nd you should have access to it now.
>
> Best,
>
> Nitesh
>
>
>
> > On Jun 2, 2020, at 12:34 AM, Christian Mertes
> > wrote:
> >
> > Dear Bioc team,
> >
> > I tried to push an update to my FRASER package, but was not
> > successful
e infos on this.
Best,
Christian
--
Christian Mertes | PhD Student / Lab Administrator
Gagneur Lab - Computational Genomics
I12 - Department of Informatics
Technical University of Munich
Boltzmannstr. 3, 85748 Garching, Germany
mer...@in.tum.de | https://in.tum.de/
and report.
>
> Martin
>
> On 10/11/19, 7:33 PM, "Bioc-devel on behalf of Christian Mertes"
> wrote:
>
> Dear Bioc Team,
>
> I noticed already the error and I'm not completely sure why this is
> happening. On appveyor it is going th
atics
>
> (716)845-1300 x4621
>
>
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee
> or agent responsible for the delivery of this message to the intended
> recipient(s), you are here
> CATALYST:
>> no slot of name "reducedDims" for this object of class "daFrame"
>>
>> CTDquerier:
>> bfcadd() failed; see warnings()
>>
>> specL:
>> pandoc.exe: Out of memory
>
quot;;, URL), sep="\t", nrows=10)[,1:10],
row.names=1)
data.frame(fread(paste0("http://";, URL), sep="\t", nrows=10)[,1:10],
row.names=1)
I guess my solution is to use http or move to use fread or curl. But I
think the clean way is to use read.table or?
Best,
ing PNGs, you should be able to
> achieve the same effect when using the png device(s) in R, and that
> will make everything more portable anyway.
>
> On Mon, Sep 9, 2019 at 9:42 AM Christian Mertes <mailto:mer...@in.tum.de>> wrote:
>
> Dear BioC team,
>
UTRIDER.Rnw)
Error: processing vignette 'OUTRIDER.Rnw' failed with diagnostics:
no lines available in input
--- failed re-building 'OUTRIDER.Rnw'
SUMMARY: processing the following file failed:
'OUTRIDER.Rnw'
Error: Vignette re-building failed.
Execution halted
-
ou are not the intended recipient(s), or the employee
> or agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> rece
use
> the binary from CRAN. Once CRAN makes the binary available your package
> will build.
>
> Valerie
>
>
>
>
>
> On 12/14/18 4:37 AM, Christian Mertes wrote:
>> Dear Bioconductor team,
>>
>> I noticed that my package OUTRIDER and also some o
erida2-checksrc.html
Also the same error came up in earlier versions already and was then solved.
https://stat.ethz.ch/pipermail/bioc-devel/2015-June/007643.html
I guess this is rather an issue of the test server. But if you need more
information on this, please let me know.
Best regard
aram-class]{BiocParallelParam}} It
>> should remedy the issue.
>>
>>
>>
>>
>> Lori Shepherd
>>
>> Bioconductor Core Team
>>
>> Roswell Park Cancer Institute
>>
>> Department of Biostatistics & Bioinformatics
>>
&
Hey all,
I have a question. My package builds perfectly on Linux and MacOS, but fails to
link my documentation correctly on Windows, which results in a warning.
The exact error which I get is:
Rd warning:
C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpei0FPy/R.INSTALL215c42273ec6/OUTRIDER/man/OUTRI
Hi Martin Morgen,
Thanks for the suggestion with the vignette. This will do it.
Best,
Christian
> On 26. Sep 2018, at 04:07, Martin Morgan wrote:
>
>
>
> On 09/25/2018 07:07 PM, Christian Mertes wrote:
>> Hi,
>> thanks for the answers.
>> Since we only
Hansen wrote:
>> It is a major weakness of PEER that it has not been submitted to a standard
>> repository. Of course, that is up to the PEER developers, but the community
>> should put pressure on them.
>>
>> On Tue, Sep 25, 2018 at 12:40 PM Christian Mertes wrote:
&g
Hi all,
Im the developer of OUTRIDER. Our package normalises RNA-seq count data and
finds expression outliers within the population.
During the development we compared our approach against PCA and PEER. The later
one is a well established method to normalise RNA-seq data.
https://github.com/gag
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