Re: [Bioc-devel] Noticed change of version for some packages in BioC 3.2

2016-03-02 Thread Berri, Stefano
right that if I leave package installation to R it won't be all that reproducible, especially when dependency relies on CRAN packages? cheers Stefano > -Original Message- > From: Dan Tenenbaum [mailto:dtene...@fredhutch.org] > Sent: 01 March 2016 16:01 > To: B

[Bioc-devel] Noticed change of version for some packages in BioC 3.2

2016-03-01 Thread Berri, Stefano
Hi. Maybe I am getting something wrong, but I am pretty sure I noticed the change of package version for some Bioconductor packages in 3.2 In particular - IRanges_2.4.6.tar.gz \ + IRanges_2.4.8.tar.gz \ - Biostrings_2.38.3.tar.gz \ + Biostrings_2.38.4.tar.gz \ - rtra

[Bioc-devel] building R and bioconductor

2015-04-28 Thread Berri, Stefano
Hi. I need a very reproducible way of creating a R builds with a series of CRAN and Bioconductor packages. I want to be able to download a specific version or R, a specific version of all packages and then install them in the right order (to make sure every package has the dependencies at inst