[Bioc-devel] duplicate commits in preprocessCore

2019-05-12 Thread Ben Bolstad
There seem to be duplicate commits in the commit history for preprocessCore. Probably due to some git/svn/git-svn bridge operations I’ve long since forgotten about doing. It would appear that these duplicate commits are already in the BioC git repository, so I cannot use the “switcheroo” optio

Re: [Bioc-devel] Package download when using functions from affy and oligo

2018-05-15 Thread Ben Bolstad
One of the CEL files is truncated or otherwise corrupted. The appropriate place to really detect that is in the code that reads the CEL file data and appropriately warn or error to the user. The bug below occurs because of a massive mismatch between the assumptions of the RMA background model