I'm encountering issues when building my package NetPathMiner on palomino3 (
http://bioconductor.org/checkResults/devel/bioc-LATEST/NetPathMiner/palomino3-checksrc.html).
The package depends on system libraries libxml2 and libsbml. So far, I've
been using `LIB_XML2` and `LIBSBML_PATH` as previously
n bump
> would be trivial if it were a Bioconductor package, but could be
> problematic for CRAN. I did bcc the maintainer.
>
> I don't think you should work around this (e.g., by disabling the example)
> because, at least if it were me, I'd forget to reenable this
ent S4Vectors and suggest the solution to iheatmapr authors
>
>
> On Wed, Jun 17, 2020 at 1:26 AM Ahmed Mohamed
> wrote:
>
>> Hi all,
>>
>> My package "lipidr" has been failing checks for a while, giving the error
>> below:
>>
>>
Hi all,
My package "lipidr" has been failing checks for a while, giving the error
below:
Error in .wrap_in_length_one_list_like_object(value, name, x) :
failed to coerce 'list(value)' to a IheatmapPlots object of length 1
(Full report here:
http://bioconductor.org/checkResults/devel/bioc-LATES
Hi All,
I noticed that all packages accepted in Bioc 3.9 have their Bioc_since
(year-in-bioc) broken. Following the svg link indicates a code error. Here
is an example from our package
https://bioconductor.org/shields/years-in-bioc/lipidr.svg.
Hope this can be easily fixed.
Cheers.
Ahmed.
this helps with clarification
>
> Cheers,
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> --
Hi all,
I noticed that bioc_check on devel checks for R version dependency, and
produces a warning to change R dependency to 3.6 (currently set as R >=
3.5.0). Just quickly looking at Bioconductor packages, it seems that at
least half of the packages will have this warning, if tested. It also mean
