On 06/05/2025 10:07, Hervé Pagès wrote:
Hi Laurent, Mike,
The culprit is an unintentional commit to SummarizedExperiment that
made its way to BioC 3.21 and that I reverted last week in
SummarizedExperiment 1.38.1. See:
https://github.com/Bioconductor/SummarizedExperiment/commit/421e175e3615d
Hi Laurent, Mike,
The culprit is an unintentional commit to SummarizedExperiment that made
its way to BioC 3.21 and that I reverted last week in
SummarizedExperiment 1.38.1. See:
https://github.com/Bioconductor/SummarizedExperiment/commit/421e175e3615d643b694e0bcb3bc579c74b3ed71
Problem is t
Yes, us too. Users are reporting DESeq2 1.48.0 for Bioconductor 3.21
is failing with something similar:
```
Error in validObject(.Object) :
invalid class “DESeqDataSet” object: superclass "ExpData" not defined
in the environment of the object's class
```
__
