Re: [Bioc-devel] Build error for cfTools

2025-03-31 Thread RAN HU
Hi Lori, Thanks for your quick response. The build error seems to stem from an environment issue with tensorflow=2.10.0. I was hoping the Bioconductor team could help address this in the devel branch. Best, Ran On Mon, Mar 31, 2025 at 2:39 PM Kern, Lori wrote: > Yes it does as it has not built

Re: [Bioc-devel] Build error for cfTools

2025-03-31 Thread Kern, Lori via Bioc-devel
Yes it does as it has not built at all for the given cycle, it would not be available via BiocManager to the end user. You can verify that it has not yet built by looking at the bottom of the package landing page at Package Archive section and having nothing available for the windows section:

Re: [Bioc-devel] Build error for cfTools

2025-03-31 Thread RAN HU
Hi, I noticed that there is still a build error on Windows Server for cfTools: https://bioconductor.org/checkResults/devel/bioc-LATEST/cfTools/palomino7-buildsrc.html. Does this prevent Windows users from installing or using the R package? If so, I’d really appreciate the opportunity to work toge

[Bioc-devel] Release_3_20 branch is now frozen

2025-03-31 Thread Kern, Lori via Bioc-devel
The RELEASE_3_19 branch is now frozen and no longer accepts push commits at git.bioconductor.org. See https://stat.ethz.ch/pipermail/bioc-devel/2025-March/020947.html Full Release Schedule available here: https://bioconductor.org/developers/release-schedule/ Lori Shepherd - Kern Biocond

Re: [Bioc-devel] Author ORCID IDs on package landing pages

2025-03-31 Thread Martin Maechler
> Gordon Smyth > on Fri, 28 Mar 2025 00:27:04 + writes: > Just reporting a possible issue with the display of author ORCID IDs on Bioconductor package landing pages. > On the release (Bioconductor 3.20) package landing pages, ORCID IDs are not displayed, even if they are

[Bioc-devel] RELEASE_3_20 frozen in a few hours

2025-03-31 Thread Kern, Lori via Bioc-devel
We are moving forward with the 3.21 release schedule. In roughly 4.5 hours the RELEASE_3_20 will be frozen and no longer accept commits. Any changes or bug corrections that are not pushed up by this time will not be in the Bioconductor 3.20 version of the package as we do not allow updates to

Re: [Bioc-devel] Add second maintainer for strandCheckR

2025-03-31 Thread Kern, Lori via Bioc-devel
Is it possible to have the current maintainer Thu-Hien confirm this? Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-

[Bioc-devel] Author ORCID IDs on package landing pages

2025-03-31 Thread Gordon Smyth
Just reporting a possible issue with the display of author ORCID IDs on Bioconductor package landing pages. On the release (Bioconductor 3.20) package landing pages, ORCID IDs are not displayed, even if they are included in the package DESCRIPTION Author@R, for example: https://bioconductor.