Re: [Bioc-devel] groHMM Bioconductor

2025-03-25 Thread Tulip Nandu
Hi, Please can you add Pariksheet to the maintainer list for groHMM package. He would like to take a look at the error. Regards, Tulip. From: Nanda, Pariksheet Sent: Monday, March 24, 2025 12:05 PM To: Tulip Nandu Subject: Re: [Bioc-devel] groHMM Bioconductor

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-25 Thread James W. MacDonald
I don't think anybody needs to help Luca. It's simple enough to unsubscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel -Original Message- From: Bioc-devel On Behalf Of Hervé Pagès Sent: Tuesday, March 25, 2025 2:18 PM To: Luca Lepore Cc: bioc-devel@r-project.org Subject: Re:

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-25 Thread Hervé Pagès
Hi Luca, Were you helped with this? Your request got buried deep in a thread that has nothing to do with it so I would not be surprised if the people who can actually help you missed it. I suggest that you post again but this time do not answer an existing thread and use a clear subject line

[Bioc-devel] GBCC2025: Upcoming Deadlines for Early Bird Registration, Abstract Submission, and Scholarships

2025-03-25 Thread Maria . Doyle
Dear Bioconductor Community, We would like to remind you of approaching deadlines for the Galaxy and Bioconductor Community Conference 2025 (GBCC2025). Don�t miss this exciting opportunity to present your work at the first-ever joint conference between the Galaxy and Bioconductor communities, i

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-25 Thread Andrew McDavid
I bisected through recent commits to Rgraphviz and found that 13c8d31 is the first commit that causes the repro I included earlier to fail. 13c8d31 does touch buildEdgeList.c, so at least the basic laws of physics remain intact. But I fail to see how this was a load-bearing call to sprintf. On M

Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz

2025-03-25 Thread Andrew McDavid
It works with 2.51.1 and fails with 2.51.5. I haven't tried bisecting intermediate commits yet. On Mon, Mar 24, 2025 at 12:02 PM Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > Thanks, super useful. So you're saying it was working with 2.51.1? Or is > it working with the release ve