[Bioc-devel] Request to Add an Additional Developer to CRISPRseek on Bioconductor

2024-11-26 Thread Zhu, Lihua (Julie) via Bioc-devel
Dear Bioconductor Core Members, I hope this message finds you well. I am writing to request the addition of a new developer to the CRSIPRseek repository on Bioconductor. The new developer, Dr. Kai Hu (cced), is an experienced R developer and has already contributed significantly to the developm

Re: [Bioc-devel] groHMM package error

2024-11-26 Thread Mike Smith
Dear Tulip, The decideTestsDGE() function was deprecated in edgeR 4.2 and removed in the new 4.4 release. You can find some notes ion this n the NEWS at https://bioconductor.org/packages/release/bioc/news/edgeR/NEWS It looks to me like you should be able to use decideTests() as a drop in replac