Re: [Bioc-devel] Unable to install Bioconductor despite multiple attempts and troubleshooting

2023-11-07 Thread Martin Morgan
Using setRepositories()does not give the correct repositories for all Bioconductor releases. For instance, the R-4-3 version might be associated with Bioconductor 3.17 (the �previous� release) or 3.18 (the �current� release). R thinks Bioc 3.17 is appropriate (not wrong, just not correct) > uti

Re: [Bioc-devel] Unable to install Bioconductor despite multiple attempts and troubleshooting

2023-11-07 Thread Zuguang Gu
An alternative way is to first set `setRepositories(ind = 1:4)`. This will add Bioconductor repos to the default repos in your R session. Then you can use `install.packages()` instead of `BiocManager::install()`. [[alternative HTML version deleted]] ___

Re: [Bioc-devel] Unable to install Bioconductor despite multiple attempts and troubleshooting

2023-11-07 Thread Sean Davis
Hi, Chiagozie. This list is mainly for developer questions. Your best bet is to ask on https://support.bioconductor.org/ where you'll get many more eyes on your question and the broadest possible community will benefit from answers. When you ask there, consider adding the output of sessionInfo() t

[Bioc-devel] Unable to install Bioconductor despite multiple attempts and troubleshooting

2023-11-07 Thread Chiagozie Ifeoma Pickens
Hi! I am wondering if you have any other suggestions on how to install the Bioconductor package? I keep getting this error message even though I am on the internet and this website https://bioconductor.org/config.yaml works. I have also discussed with my IT department and they cannot find any iss

Re: [Bioc-devel] ReactomeGSA missing in Bioconductor 3.18?

2023-11-07 Thread Johannes Griss
Hi Jennifer, Thanks a lot for the quick response! Our build server was still on an older version of Seurat. Data package is updated. Kind regards, Johannes On 06.11.23 20:30, Jennifer Wokaty wrote: Hi Johannes, I installed R 4.3.2 on the release builders on Thursday after the last Experim