Re: [Bioc-devel] cfTools build error

2023-10-10 Thread Martin Grigorov
Hi, https://pypi.org/project/tensorflow/2.10.0/#files is the first release that provides a wheel for Linux ARM64 (aarch64). Would it be OK to update from 2.8.0 to 2.10.0 ? Or even better to 2.14.0 (latest and greatest)! Regards, Martin On Tue, Oct 10, 2023 at 9:30 PM RAN HU wrote: > Dear Bioc

[Bioc-devel] cfTools build error

2023-10-10 Thread RAN HU
Dear Bioc Team, I have a build error on palomino4 and kunpeng2 due to an environment problem: Multiple platform build/check report for BioC 3.18 - All results for package cfTools (bioconductor.org) PackagesNotFoundError: The follow

[Bioc-devel] Release_3_17 branch is now frozen.

2023-10-10 Thread Kern, Lori via Bioc-devel
The RELEASE_3_17 branch is now frozen and no longer accepts push commits at git.bioconductor.org. See: https://stat.ethz.ch/pipermail/bioc-devel/2023-October/019926.html and https://bioconductor.org/developers/release-schedule/ Thank you. Lori Shepherd - Kern Bioconductor Core Team Roswell

Re: [Bioc-devel] Vignette files causing package to exceed 5 MB size limit

2023-10-10 Thread Boyi Guo
Can you try to add ` fig.retina = NULL` in your `knitr::opts_chunk$set()` setting? That helped me to reduce the size of images in image-heavy vignettes. Source: http://zevross.com/blog/2017/06/19/tips-and-tricks-for-working-with-images-and-figures-in-r-markdown-documents/#the-fig.retina-argument-

[Bioc-devel] RELEASE_3_17 branch frozen in a few hours

2023-10-10 Thread Kern, Lori via Bioc-devel
We are moving forward with the 3.18 release schedule. In roughly 5 hours the RELEASE_3_17 will be frozen and no longer accept commits. Any changes or bug corrections that are not pushed up by this time will not be in the Bioconductor 3.17 version of the package as we do not allow updates to pa

Re: [Bioc-devel] extraChIPs build error on kunpeng2

2023-10-10 Thread Martin Grigorov
Hi, On Tue, Oct 10, 2023 at 10:30 AM Stevie Pederson < stephen.pederson...@gmail.com> wrote: > Hi, > > I've got a build error on kunpeng2 which has me a bit stuck, with the build > report available here: > > https://bioconductor.org/checkResults/3.18/bioc-LATEST/extraChIPs/kunpeng2-checksrc.html

[Bioc-devel] extraChIPs build error on kunpeng2

2023-10-10 Thread Stevie Pederson
Hi, I've got a build error on kunpeng2 which has me a bit stuck, with the build report available here: https://bioconductor.org/checkResults/3.18/bioc-LATEST/extraChIPs/kunpeng2-checksrc.html I'm struggling to understand where it's coming from as it doesn't seem related to the package itself. I th