Re: [Bioc-devel] benchdamic TIMEOUT in merida1 and kunpeng2

2023-07-17 Thread Matteo Calgaro
Dear Martin and Levi, I truly appreciate your tips and the time you took to assist me. I'm going to look further into your suggestions by trying to reduce the computational time needed to build the vignette. I'll let you know if I manage to fix the problem. Matteo Il giorno lun 17 lug 2023 alle o

Re: [Bioc-devel] maintenance of software package YAPSA

2023-07-17 Thread Kern, Lori via Bioc-devel
Yes we can add a co maintainer. I will contact Zuguang Gu off mailing list to set up credentials for access. Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 __

[Bioc-devel] maintenance of software package YAPSA

2023-07-17 Thread Huebschmann, Daniel
Dear bio-devel list/team, I am writing this e-mail to ask whether z...@dkfz.de may be added as co-maintainer to the software package YAPSA? Thank you very much in advance and best regards Daniel. Dr. rer. nat. Dr. med. Daniel Huebschmann, CASM Group leader Computational Oncology, Molecu

[Bioc-devel] change maintainer of the YAPSA package

2023-07-17 Thread Zuguang Gu
Dear Bioc, I read in the previous email that the YAPSA package will be deprecated in the next bioc release. I am one of the authors of this package but not the maintainer. Can you add me to the repo of YAPSA so that I can also have the write permission? I can take over the maintenance job of YAPSA

Re: [Bioc-devel] benchdamic TIMEOUT in merida1 and kunpeng2

2023-07-17 Thread Levi Waldron
It looks to me like benchdamic doesn't actually use the HMP16SData package, but a repackaged example dataset placed in the data/ directory. I do notice that the vignette takes very long to run, especially the chunks below. My guess is that you are seeing differences in speed or number of available