Re: [Bioc-devel] Python module "tensorflow_probability" not found

2023-07-06 Thread Kasper Daniel Hansen
This sounds excellent Kim! Here you can get 2.10 for Windows: https://anaconda.org/anaconda/tensorflow although my experience is that I hate mixing channels on conda. It is also quite interesting that this conda package also has Windows at an older version (but just 2.10 vs. 2.12) This really spe

Re: [Bioc-devel] Python module "tensorflow_probability" not found

2023-07-06 Thread Kim Philipp Jablonski
Thank you all so much for your input and the references! @Kasper: I mostly rely on tensorflow and tensorflow-probability, so I might somehow get rid of the keras dependency but it would require some work. After being inspired by the lovely orthos package (thanks Charlotte!), I decided to play aro

Re: [Bioc-devel] Omada package failing due to removed dependency

2023-07-06 Thread Kern, Lori
We would not hunt down the lab especially for CRAN packages, but you could reach out if you like. That would probably be a recommended action to either ask someone from their lab to maintain or if you are willing and you really want the package around you could ask the lab if they mind you vol

Re: [Bioc-devel] Python module "tensorflow_probability" not found

2023-07-06 Thread Vincent Carey
That's great news. FWIW I am finding that the advice at https://rstudio.github.io/reticulate/articles/python_dependencies.html can work to produce properly resolved python dependencies. Just don't follow the example literally; the requested scipy version may not exist. Version 1.11.1 does. Stay

Re: [Bioc-devel] Python module "tensorflow_probability" not found

2023-07-06 Thread Charlotte Soneson
Hi, in case it's useful: we have a package (orthos) in review (https://github.com/Bioconductor/Contributions/issues/3042) which uses basilisk to set up a conda environment with tensorflow and keras. It builds and runs fine both on GitHub Actions (GitHub repo here: https://github.com/fmicompbi