Re: [Bioc-devel] Push changes to release branch

Hi Jennifer, Thank you for the help, Best wishes, Matine On Mon, Mar 27, 2023 at 2:20 PM Jennifer Wokaty < jennifer.wok...@sph.cuny.edu> wrote: > Yes, you should make changes on release as well. You can read more about > how to do this at > https://contributions.bioconductor.org/git-version-con

Re: [Bioc-devel] Push changes to release branch

Yes, you should make changes on release as well. You can read more about how to do this at https://contributions.bioconductor.org/git-version-control.html#bug-fix-in-release-and-devel. Chapter 21 Git Version Control | Bioconductor Packages: Development, Maintenance, and Peer Review

[Bioc-devel] _R_CHECK_SUGGESTS_ONLY=true

On March 29, we'll add _R_CHECK_SUGGESTS_ONLY=true​ to our devel 3.17 Linux builder to detect missing package dependencies. You can read more about the motivation behind the issue at https://github.com/Bioconductor/BBS/issues/248. If you notice after March 29 that one of your packages is failing

[Bioc-devel] Push changes to release branch

Hi Bioc-team, I am the maintainer of the HPiP package. The package showed a problem last couple of weeks and I have already committed changes to the devel branch. The package is fine now without any errors or warnings in the devel branch. My question is do I need to commit those changes to the rel

Re: [Bioc-devel] Problem updating package

Is your github name appropriately linked in the BiocCredentials application to auto pull? If not you should upload the key manually to this location. https://git.bioconductor.org/BiocCredentials/ If the key has been uploaded I would check to make sure the naming convention is correct. See #1,

[Bioc-devel] Problem updating package

Dear Bioconductor team, I am trying to update MOSim package in Bioconductor. I was recently named as the maintainer of the package and it is my first time updating it. For that, I have created an ssh key and added it to ssh-agent and github. We have done: $ git remote add upstream g...@git.biocon

Re: [Bioc-devel] "Graphics API version mismatch": Devel package check on macOS failing

Hi Sarvesh, Thanks for reporting the issue. I had to reinstall ragg on merida1. The errors should clear up on tomorrow's build report. Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team From: Bioc-devel on behalf of Sarvesh Nikumbh Sen

Re: [Bioc-devel] Deprecation of package chromswitch

I can take care of the deprecation. Thank you for letting us know. Cheers Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: B

Re: [Bioc-devel] Please deprecate NxtIRFcore

Thank you we will begin the process of deprecating NxtIRFcore only. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From:

[Bioc-devel] New Package Submission Deadline this Friday for Bioconductor 3.17

The final day to submit new packages to the Bioconductor contributions tracker to have a shot at being included in the upcoming 3.17 release is this Friday March 31st. Please note: submission by this date does not guarantee it will be included - the package must undergo an official review and

[Bioc-devel] "Graphics API version mismatch": Devel package check on macOS failing

Hi, I see some devel packages (including my package seqArchRplus ) failing on macOS due to "Graphics API version mismatch". The R-devel announcement here