[Bioc-devel] Reopen cfTools issue #2608

2023-03-20 Thread RAN HU
Hi, I am the maintainer of cfTools issue #2608. I submitted it last year but didn't have many updates then. This issue has been closed. Now I have modified the package and am ready to submit it again. Could you please reopen the issue? Many thanks! Best, Ran [[alternative HTML version de

Re: [Bioc-devel] updating pathwayPCA: "permission denied (publickey)"

2023-03-20 Thread Gabriel Odom
Thank you Prof. MacDonald. The solution ended up being slightly different than we had anticipated, but I'm including it below should any other users have similar difficulties. TL;DR: RStudio Terminal can't find my SSH key (despite being listed in the RStudio Global Options), but Git Bash can. So

[Bioc-devel] Single Package Builder package dependency issue

2023-03-20 Thread Kern, Lori
We recently updated R on the devel builders. Some of the recent updates have temporarily caused issues with finding package dependencies on the Single Package Builder for new submission. We are aware of the issue and are working on a fix. We are sorry for the inconvenience and will have it reme

Re: [Bioc-devel] download stats not accessible

2023-03-20 Thread Sarvesh Nikumbh
While I too wondered why the OP mentions unavailability "for months", now re-reading the OP's email, may be they meant "for months" granularity which is (now temporarily un)available! :D Cheers, Sarvesh On Mon, 20 Mar 2023 at 16:50, Hervé Pagès wrote: > Not for months, only since last week. T

Re: [Bioc-devel] download stats not accessible

2023-03-20 Thread Hervé Pagès
Not for months, only since last week. They should be back in the next 12-18 hours. Thanks for reporting this. Cheers, H. On 19/03/2023 11:00, Luo Weijun wrote: Dear BioC team, I noticed that download stats for BioC packages are not accessible for months: https://bioconductor.org/packages/stat

Re: [Bioc-devel] Packages failing on macOS build system - recent updates to the build system?

2023-03-20 Thread Jennifer Wokaty
Johannes, Thanks for reporting this. It should improve in the next build report. Jennifer Wokaty (they/them) Waldron Lab at CUNY SPH Bioconductor Core Team From: Bioc-devel on behalf of Rainer Johannes Sent: Monday, March 20, 2023 6:44 AM To: bioc-devel@r-proj

[Bioc-devel] Packages failing on macOS build system - recent updates to the build system?

2023-03-20 Thread Rainer Johannes
Dear Bioc core, after checking some build reports for a set of packages it seems that many are failing due some recent updates with the macOS builder. The common theme seems to be that for these packages (CRAN) dependencies "magick" and "rsvg" are not available on macOS. Just wanted to give a