Re: [Bioc-devel] DataFrameList to Wide Format DataFrame

2021-12-16 Thread Dario Strbenac via Bioc-devel
Hello, Ah, yes, the sample names should of course be in the rows - Friday afternoon error. In the question, I specified "largely the same set of features", implying that the overlap is not complete. So, the example below will error. DFL <- DataFrameList(X = DataFrame(a = 1:3, b = 3:1, row.names

Re: [Bioc-devel] DataFrameList to Wide Format DataFrame

2021-12-16 Thread Hervé Pagès
A metadata column on a DataFrame runs along its 2nd dimension so is not a good place to put the list names. Have you tried unlist()?   library(S4Vectors)   DF <- DataFrame(id=letters[1:10], score=runif(10))   f <- sample(LETTERS[1:3], 10, replace=TRUE)   DFL <- split(DF, f)   DFL   # SplitD

[Bioc-devel] DataFrameList to Wide Format DataFrame

2021-12-16 Thread Dario Strbenac via Bioc-devel
Good day, Is there a function in the S4Vectors API which converts a DataFrameList into a DataFrame, automatically putting the list names into one of the metadata columns, analogous to MultiAssayExperiment's wideFormat function? The scenario is mutliple data sets from different organisations mea

Re: [Bioc-devel] BioC2022 Seattle July 27-29 hybrid conference organizing committee

2021-12-16 Thread Levi Waldron
Correction, I'd like to invite any interested members of the **community** to get involved! Feel free to get in touch with me with any questions. This is a great way to get to know other passionate Bioconductor users and developers while providing a great service to the community. On Thu, Dec 16,

[Bioc-devel] BioC2022 Seattle July 27-29 hybrid conference organizing committee

2021-12-16 Thread Levi Waldron
I'd like to invite any interested members of the committee to get involved in organizing BioC2022, planned to be in a hybrid format in Seattle July 27-29, 2022. There is lots to be done, including sponsorship and funding, outreach, website, workshop technical organization, program development, code