Re: [Bioc-devel] version bump

Hi Hervé, Thank alot for the help. It works now Matine Sent from my iPhone > On Nov 30, 2021, at 1:33 PM, Hervé Pagès wrote: > > Hervé [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/ma

[Bioc-devel] GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")

Hi, I a using GEOquery to download some microarray datasets. It worked previously without any problem under old R version (3.5 probably), but now run into problem now I've updated R to version 4.0.5. library(GEOquery) gse<-getGEO(GEO="GSE137140") # Found 1 file(s) # GSE137140_series_matrix.txt

Re: [Bioc-devel] Merging or renaming a fork, and appropriate journal for package updates

Hi, Pariksheet. For #1, I suspect that it might be challenging to publish a paper based on the context you provide, but I do not have a good handle on the specific changes you have proposed. To make your work publishable, you would probably need to at least publish the software and it appears f

[Bioc-devel] Merging or renaming a fork, and appropriate journal for package updates

Hi folks, I'm wrapping up my dissertation and one of the chapters touches on a summer of patching a Bioconductor package that currently lives as a separate GitHub fork (the list of changes is here [1]). 2 of the questions I've been asked by a member of my committee are whether to: (1) assoc