Hi Ulrich,
The updated BSgenome.Mmusculus.UCSC.mm10.masked (version 1.4.3) will
become available via BiocManager::install() for BioC 3.14 users in about
3 hours. It might be too late for the daily builds to pick it up today
in which case podkat will still be in ERROR on tomorrow's report but i
Hi,
It's still on my list to reforge BSgenome.Mmusculus.UCSC.mm10.masked. I
reforged BSgenome.Mmusculus.UCSC.mm10 back in June after the UCSC folks
updated the mm10 genome and tracks (see
https://github.com/Bioconductor/GenomeInfoDb/issues/27). But
BSgenome.Mmusculus.UCSC.mm10.masked is still
We will look into the ERROR. You do not have to alter your package at this
time as the ERROR is on our end and we will look at correcting.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffa
Hi,
The vignette of my package 'podkat' loads the
'BSgenome.Mmusculus.UCSC.mm10.masked' package. Currently, my package fails
on all three BioC 3.14 servers because of this package. On nebbiolo2 and
riesling1, the package is not available, while the package is available, but
fails to load, on merid
It looks like polyclip is available on CRAN for windows. Let's wait for the
next release build report to see if it clears up on its own. If the issue
persists, we will look into why polyclip is failing to install on windows.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Compreh
Hi,
I recently got a build error for my package "spicyR".
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'polyclip'
polyclip is imported by spatstat and so I suspect any other packages that also
depend on spatstat might be having proble
