Re: [Bioc-devel] Force Package Update after Removing Large Files from .git History

Thank you Nitesh. Our next step is then to push a version bump to trigger the re-build? Our contribution issue is still listed as ERROR at this time (https://github.com/Bioconductor/Contributions/issues/2064). On May 6, 2021, at 10:28 AM, Nitesh Turaga mailto:nturaga.b...@gmail.com>> wrote: No

Re: [Bioc-devel] Force Package Update after Removing Large Files from .git History

Hi Gabriel, Thanks for taking the time to fix the package size to < 5MB. I�ve synced your package repo on git.bioconductor.org. You should be good to go now. If you have any further questions on this, please feel free to reply to this thread. Best, Nitesh From: Bioc-devel on behalf of Gabr

[Bioc-devel] Force Package Update after Removing Large Files from .git History

Dear Bioconductor Team, We are submitting the package coMethDMR (https://github.com/Bioconductor/Contributions/issues/2064) and we have fixed all errors and warnings listed in the multi-system build report. One error was that the package was too large. We followed the steps to use BFG here (htt

Re: [Bioc-devel] Bioc Git credentials

Great, thanks! Leonard On Mon, May 3, 2021 at 11:53 PM Nitesh Turaga wrote: > Hi Leonard, > > > > I’ve changed your email now, you should be able to activate your account. > > > > The email listed was to a gene.com email address. > > > > Add new SSH keys if you don’t have the old key pairs. > >

[Bioc-devel] Question about IRanges for coordinates greater than 536870912

Hi All, Recently I encountered issues with IRanges that the coordinates greater than 536870912. Is there any easy solution to extract the information from bam file for the range greater than 2^29 via Rsamtools or GenomicAlignments? And does Rsamtools support CRAI or CSI index formats? Thank yo

Re: [Bioc-devel] How to repeat the error: shape of 'skeleton' is not compatible with 'NROW(flesh)'

Hi Lori, Thank you so much for the message. Jianhong. From: Kern, Lori Sent: Thursday, May 6, 2021 8:09 AM To: Jianhong Ou, Ph.D. ; bioc-devel@r-project.org Subject: Re: How to repeat the error: shape of 'skeleton' is not compatible with 'NROW(flesh)' This is

Re: [Bioc-devel] How to repeat the error: shape of 'skeleton' is not compatible with 'NROW(flesh)'

This is a known issue with a recent push to IRanges. The maintainers are aware and working on a fix. You can follow the reported issue https://github.com/Bioconductor/IRanges/issues/40 It shoul

Re: [Bioc-devel] Windows build. error: "DLL 'RcppParallel' not found: maybe not installed for this architecture?"

A new version of RcppParallel was pushed to CRAN yesterday. The builders should pick this up automatically and we hope it should resolve in the next day or two. If it does not we will follow up. Thank you for the report. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensiv

[Bioc-devel] How to repeat the error: shape of 'skeleton' is not compatible with 'NROW(flesh)'

Hi all, In most recent build I got error message: shape of 'skeleton' is not compatible with 'NROW(flesh)' And I have trouble in repeating the error by Bioconductor/bioconductor_docker:devel. I am asking will the bioconductor_docker will update soon or I should install the newest development