Re: [Bioc-devel] [EXT] Re: Sudden Bioconductor nightly build fail for IsoCorrectoRGUI: cannnot add binding of 'variable' to the base environment

Dear Martin, thank you very much for the quick help. I'll try it this way. BTW: I could have read the NEWS file by my own before asking, sorry for that. Best Christian On 04.05.21 12:21, Martin Morgan wrote: This is because of a change in base R https://github.com/wch/r-source/blob/

[Bioc-devel] Windows build. error: "DLL 'RcppParallel' not found: maybe not installed for this architecture?"

Hello, the package ppcseq fails on windows build (Multiple platform build/check report for BioC 3.13 - INSTALL report for ppcseq on riesling1 (bioconductor.org) ) because of the lack of RcppParallel in the wi

Re: [Bioc-devel] Fixing build error for the first time

Thank you very much, Lori. Now it is very clear. = Fabrício de Almeida Silva Undergraduate degree in Biological Sciences (UENF) MSc. candidate in Plant Biotechnology (PGBV/UENF - RJ/Brazil) Laboratório de Química e Função de Proteínas e Peptídeos (LQFPP/CBB/UENF - RJ

Re: [Bioc-devel] Fixing build error for the first time

The RELEASE_3_12 branch was frozen but the devel (master) branch is not. You may continue to push to upstream master to make relevant changes. Yes that procedure would stay the same to push to the devel branch of git.bioconductor and your individual github repo. In the future (after the next re

[Bioc-devel] Fixing build error for the first time

Hi, all. I've noticed that my package has returned an error in the Bioc build (https://bioconductor.org/packages/devel/bioc/html/BioNERO.html). As it was accepted last month and this will be my first change to the package after acceptance, I would like to check some things: 1. Can I change

Re: [Bioc-devel] Maintainer for preciseTAD

Hi Mikhail, I�ve added you to have access to the package preciseTAD. You should be able to use your registered SSH keys with Bioconductor to access the package now. I cannot make you the maintainer directly. This is a discussion you should have with Spiro and make the change in the package DESC

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

Hi Hervé, Thanks a lot for looking with detail into this. I completely agree that a fix for this would be very beneficial. I pushed yesterday an update to the devel version of ncRNAtools, which hopefully should fix the issue. The change seems not to be propagated yet, but hopefully it will be

Re: [Bioc-devel] DENIED when update package EnMCB (hook declined)

As announced on Monday, the RELEASE_3_12 branch is now frozen in preparation for the 3.13 release. Please make any appropriate changes on the master branch. Here is the announcment of the freeze https://stat.ethz.ch/pipermail/bioc-devel/2021-May/018063.html Also found on the release schedule po

[Bioc-devel] DENIED when update package EnMCB (hook declined)

Dear bioconductor team, Recently, I want to upgrade our package EnMCB at release 3.12 I added some major changes to the package, however when I push the changes, It showed that: remote: FATAL: W refs/heads/RELEASE_3_12 packages/EnMCB whirlsyu DENIED by fallthru remote: error: hook declined to upd