[Bioc-devel] Cannot find my package "interacCircos" on check results of BioC3.13

Hello, I’m the maintainer of “interacCircos”, which should be accepted two weeks ago. However, I still cannot find the build results of “interacCircos” on the latest nightly build of BioC3.13, which should be available at https://bioconductor.org/checkResults/

Re: [Bioc-devel] Bioconductor Release Announcement: RELEASE_3_12 branch freeze

Dear Nitesh, What happens to packages presenting a check error (e.g. cellmigRation installs and builds on all supported OSs, but fails on macOS while checking a function example)? I've been working on solving that, but there

[Bioc-devel] Sudden Bioconductor nightly build fail for IsoCorrectoRGUI: cannnot add binding of 'variable' to the base environment

Hello BioC community, I am the maintainer of the IsoCorrectoRGUI package. Starting with April 30th, problems are reported in the Multiple platform build/check report for BioC3.13 (Linux, Windows Server as well as macOS) though IsoCorrectoRGUIs code base did not change since end of October 2020.

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

Hi Lara, I took a closer look at this and yes there seems to be something about nebbiolo1 that causes problems: it's behind a firewall. And for some reason this firewall causes the internal calls to httr::GET() to return responses with the following header: > GET(redirectURL)$headers $da

Re: [Bioc-devel] Time-out error on Ubuntu 20.04 build

Dear All, Since it seems the main Linux target in 3.13 is now Ubuntu 20.04, I have been recently trying to get back to fixing the TIMEOUT of my package ncRNAtools. Mike previously reported as seen below that he does not get the TIMEOUT when running R CMD build / check on an Ubuntu 20.04. I have

Re: [Bioc-devel] Bioconductor Release Announcement: RELEASE_3_12 branch freeze

Dear Maintainers, The RELEASE_3_12 branch is now frozen. Best, Nitesh From: Nitesh Turaga Date: Monday, May 3, 2021 at 1:08 PM To: bioc-devel@r-project.org Subject: Re: Bioconductor Release Announcement: RELEASE_3_12 branch freeze Today - May 3, 2021. My apologies. Nitesh From: Nitesh Tura

Re: [Bioc-devel] Bioconductor Release Announcement: RELEASE_3_12 branch freeze

Today - May 3, 2021. My apologies. Nitesh From: Nitesh Turaga Date: Monday, May 3, 2021 at 1:04 PM To: bioc-devel@r-project.org Subject: Bioconductor Release Announcement: RELEASE_3_12 branch freeze Dear Maintainers, Please keep in mind that we are on schedule for our release as given in htt

[Bioc-devel] Bioconductor Release Announcement: RELEASE_3_12 branch freeze

Dear Maintainers, Please keep in mind that we are on schedule for our release as given in http://bioconductor.org/developers/release-schedule/. Today (April 14th 2020) at 2pm EDT, I will freeze the commits to the RELEASE_3_12 branch in Bioconductor. This is for all packages (software, data-exp

Re: [Bioc-devel] Bioc Git credentials

Hi Leonard, I�ve changed your email now, you should be able to activate your account. The email listed was to a gene.com email address. Add new SSH keys if you don�t have the old key pairs. Best, Nitesh From: Bioc-devel on behalf of Leonard Goldstein Date: Sunday, May 2, 2021 at 10:06 PM T

Re: [Bioc-devel] issue with ssh public key

Hi, I�ve made the change in your account. You�ll need to activate your BioCredentials account now, https://git.bioconductor.org/BiocCredentials/account_activation Add new SSH keys and you should be good to go. You cannot make the change on your end, if you change your email address again. Thi

Re: [Bioc-devel] issue with ssh public key

Hi, This was my previous email. Please could you put my new email tiphaine.mar...@mssm.edu Could you remind me how I can change later if need it. Thanks, Tiphaine From: Nitesh Turaga Sent: Monday, May 3, 2021 9:07 AM To: Martin, Tiphaine ; bioc-devel@r-project.or

Re: [Bioc-devel] issue with ssh public key

The email registered is tiphaine.mar...@kcl.ac.uk . If this is not correct, I will have to change it on my end. Best, Nitesh From: Bioc-devel on behalf of Martin, Tiphaine Date: Saturday, May 1, 2021 at 11:47 PM To: bioc-devel@r-project.org Subject: [Bioc-

Re: [Bioc-devel] documentation of raw data

In general the documentation in inst/scripts can be code, sudo code, or text but should indicate the source of the data and how it was generated and other useful information for using the data. Think of it as a how to if a user wanted to mimic or recreate the data you are providing. Cheers,