Re: [Bioc-devel] unable to push to new package

2021-04-27 Thread Nitesh Turaga
Hi, If you think the warnings are transient, I suggest you issue a new build by bumping the version number on your package. Try that and then go ahead with further debugging. Make sure you are using the correct version of R and Bioconductor. Nitesh From: Gross Fridolin Date: Tuesday, April

Re: [Bioc-devel] R CMD CHECK warning -

2021-04-27 Thread Vincent Carey
I'd suggest that this topic be dealt with on the associated contribution issue. Please report sessionInfo() when discussing warnings. I will now make some comments on the contribution issue as I am trying to follow up your concerns. Thanks On Tue, Apr 27, 2021 at 3:07 AM alan murphy wrote:

[Bioc-devel] Bioconductor nightly build fail - ewceData not available for EWCE

2021-04-27 Thread Murphy, Alan E
Hi all, My recently accepted package EWCE(https://github.com/Bioconductor/Contributions/issues/1904) failed its first nightly build (https://bioconductor.org/checkResults/3.13/bioc-LATEST/EWCE/nebbiolo1-install.html) because the related data package ewceData, which was also recently accepted,

[Bioc-devel] lazy loading failure on macOS

2021-04-27 Thread Waldir Leoncio Netto
Dear all, Our recently-accepted package (cellmigRation) fails when installing and building on the machv2 (macOS) machine. Unfortunately, the report on http://bioconductor.org/checkResults/devel/bioc-LATEST/cellmigRation/machv2-install.html isn't much helpful to me, as it simply says "ERROR: laz

Re: [Bioc-devel] unable to push to new package

2021-04-27 Thread Gross Fridolin
Dear Nitesh, Thanks so much! After we did as you suggested, pushing upstream worked fine. There is still a warning in the build report, but it seems that this is not under our control: * checking whether package 'scanM

[Bioc-devel] R CMD CHECK warning -

2021-04-27 Thread alan murphy
Hi all, I am working on MungeSumstats(https://github.com/neurogenomics/MungeSumstats) which is being considered for addition to Bioconductor (issue: https://github.com/Bioconductor/Contributions/issues/2043). To avoid importing large reference genomes in my package, I recently put them in as