[Bioc-devel] Error building package

Dear all, I am the creator of the hummingbird package ( https://bioconductor.org/packages/release/bioc/html/hummingbird.html ) and suddenly today I noticed that the build is failing, even though I did not make any change to the package, it was building fine the previous days. I am not sure why thi

[Bioc-devel] Phase 3 1000 genomes reference genome

Hi all, I am looking for the 1000genomes Phase3 Reference Genome Sequence (equivalent to the Phase 2 version would be useful: BSgenome.Hsapiens.1000genomes.hs37d5 https://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.1000genomes.hs37d5.html). The dataset I'm looking f

[Bioc-devel] helper function arguments: best practice

Dear community, I am writing my first package with the aim to publish it on Bioconductor. To structure the code and make it  (human) readable I have defined some helper functions, that will not be exported. The main function (which will be user available) makes some data structuring, defines

Re: [Bioc-devel] biocLite not installing

Dear Dr Diaz: This email list is for development of software in Bioconductor. Questions about basic functionality should go to support.bioconductor.org -- please visit that site and make an account. For your specific question please note the message > source("https://bioconductor.org/biocLite.

[Bioc-devel] biocLite not installing

> BiocManager::install("biocLite")Bioconductor version 3.12 (BiocManager > 1.30.12), R 4.0.4 (2021-02-15)Installing package(s) 'biocLite'Installation > path not writeable, unable to update packages: broom, callr, cli, cpp11, > dbplyr, diffobj, pkgload, processx, reprex, survival, tinytex, vctrs

[Bioc-devel] New maintainer for BASiCS

Dear all, Could you please update your records for BASiCS to have Alan O’Callaghan (alan.ocallag...@outlook.com) as the maintainer? Many thanks in advance. Best wishes, Cata _ Catalina Vallejos PhD Chancellor’s Fellow and Group

[Bioc-devel] Update maintainer of nucleR package

Hello, I am Diego and I am the current maintainer of the nucleR package [1]. As per [2], we would like to change the current maintainer to be Alba, (with email alba.s...@irbbarcelona.org), CCed here. Please, let me know if you need anything else to do the change. Thanks [1] https://bioconductor