[Bioc-devel] Removal of large items in git history - BiocCheck warning

2021-03-04 Thread Murphy, Alan E
Hi all, I am working on the development of EWCE for submission to Bioconductor. I have removed some large objects from the package and moved them to a separate ExperimentHub package however, after their removal, I got a BiocCheck large file warning. To deal

Re: [Bioc-devel] RegEnrich problems reported in the Multiple platform build/check report for BioC 3.12

2021-03-04 Thread Kern, Lori
Please remember there are always two branches of Bioconductor active at one time, a release and a devel branch. Pushing to master and changing to 1.1.1 was on the devel branch and is indeed building cleanly as indicated on the build report: http://bioconductor.org/checkResults/devel/bioc-LATEST/R

Re: [Bioc-devel] Moving minfi classes definition to a lighter package

2021-03-04 Thread 顾祖光
Hi all, I have a package `pkgndep` ( https://cran.r-project.org/web/packages/pkgndep/index.html) which can make a dependency heatmap for a specific package. As shown in the following figure for minfi package (version 1.30.0) https://jokergoo.github.io/pkgndep/stat/image/minfi.png Rows are the pa