And For What Its Worth - I can reproduce the ERROR locally using a git clone
from
g...@git.bioconductor.org:packages/epihet.git
(base) shepherd@jbcj433:~/BioconductorPackages/Software$ R CMD build epihet
Bioconductor version 3.13 (BiocManager 1.30.10), ?BiocManager::install for help
* checking
Please make sure your github repositories are up-to-date with the
git.bioconductor.org repositories. On quick glance, I can see you have not
pulled the changes on the bioconductor server since the version numbers are not
up-to-date for relesae and devel. The version we have at git.bioconductor
Hi Kern,
I built epihet in my linux system, did not see anything wrong.
Could you help me?thanks
First, download epihet, and build
(base) [chenx@helix ~]$ git clone
https://github.com/TheJacksonLaboratory/epihet.git
Initialized empty Git repository in /home/c-chenx/epihet/.git/
remote: Enumerat
Curious situation, that we can hope will be resolved with action at CRAN.
FWIW RCurl for windows is building/checking without incident:
https://cran.r-project.org/bin/windows/contrib/checkSummaryWin.html
The UniProt.ws check failure on malbec2 etc. seems unrelated, the URL noted
in the failure re
It's not something I need, per se, but what other packages that depend on
RCurl need. This issue was brought to my attention because someone on the
support site had a problem with the UniProt.ws package, which uses RCurl to
download data. Given the reverse dependency tree for RCurl I assume this
pr
Your packages is failing in both release and devel of Bioconductor. You need
to fix the package. You can see the ERROR on the build reports
bioconductor.org/checkResults/devel/bioc-LATEST/epihet
and
bioconductor.org/checkResults/release/bioc-LATEST/epihet
If you click on the ERROR on either
I reproduced the problem you noted. Rebuilding RCurl with (an updated?)
openssl for
windows is not a slam-dunk for me at the moment. Can the curl package do
what you need?
On Mon, Nov 23, 2020 at 11:49 AM James W. MacDonald wrote:
> FYI, there appears to be a problem with RCurl on Windows, mos
Hi Bioconductor,
Recently I received the next email, but I used the website you sent me, version
1.7 looks fine after three days when I submitted :
bioconductor.org/checkResults/devel/bioc-LATEST/epihet/.
And I can find my package on the following website.
bioconductor.org/packages/devel/bioc/
It would really help (maybe this has been mentioned before, but I'm not very
good at remembering things) to indicate what package this is!
When R installs a package, it (probably this is not the right thing to do)
builds all vignettes in the same session. Maybe devtools does this too? You
could
RCurl was originally an omeghat offering by Duncan Temple Lang. I have a
windows
machine here and will have a look.
On Mon, Nov 23, 2020 at 11:49 AM James W. MacDonald wrote:
> FYI, there appears to be a problem with RCurl on Windows, most likely due
> to building against an old version of Open
FYI, there appears to be a problem with RCurl on Windows, most likely due
to building against an old version of OpenSSL. Or at least that's what
Google tells me. Anyway, reproducible code:
> library(RCurl)
> url <- "www.uniprot.org/mapping"
> params <- c(from = "ACC+ID", to = "PDB_ID", format = "t
Hello BioC community,
Still haven't figured out why I get a buffer_overflow_detected error when I
build vignettes for our package netDx.
I find that running "devtools::build_vignetttes()" causes a "*** buffer
overflow detected ***" error after the first vignette has been built and
the second is ju
12 matches
Mail list logo
